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    clec-180 C-type lectin domain-containing protein 180 [ Caenorhabditis elegans ]

    Gene ID: 177534, updated on 9-Dec-2024

    Summary

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    Official Symbol
    clec-180
    Official Full Name
    C-type lectin domain-containing protein 180
    Primary source
    WormBase:WBGene00017991
    Locus tag
    CELE_F32E10.3
    See related
    AllianceGenome:WB:WBGene00017991
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable carbohydrate binding activity. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See clec-180 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    10
    Sequence:
    Chromosome: IV; NC_003282.8 (7568893..7573766)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene TPR_REGION domain-containing protein Neighboring gene Low-density lipoprotein receptor domain class A Neighboring gene ncRNA Neighboring gene Tudor domain-containing protein Neighboring gene Chromo domain-containing protein cec-4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Changes in Caenorhabditis elegans gene expression following exposure to Photorhabdus luminescens strain TT01. Hoinville ME, et al. Dev Comp Immunol, 2018 May. PMID 29203330
    2. Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans. Schulenburg H, et al. Immunobiology, 2008. PMID 18406370
    3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    C-type lectin domain-containing protein 180
    NP_001294174.1
    • Confirmed by transcript evidence
    NP_001368446.1
    • Confirmed by transcript evidence
    NP_001368447.1
    • Confirmed by transcript evidence
    NP_501229.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7568893..7573766
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001307245.3 → NP_001294174.1  C-type lectin domain-containing protein 180 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294174.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q19970, W6RRY7, W6RTK1, W6SBE9
      Conserved Domains (1) summary
      smart00034
      Location:59 → 184
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    2. NM_068828.4 → NP_501229.2  C-type lectin domain-containing protein 180 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501229.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q19970
      Conserved Domains (1) summary
      smart00034
      Location:59 → 184
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    3. NM_001380335.1 → NP_001368446.1  C-type lectin domain-containing protein 180 [Caenorhabditis elegans]

      Status: REVIEWED

      Conserved Domains (1) summary
      pfam05109
      Location:288 → 397
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    4. NM_001380336.1 → NP_001368447.1  C-type lectin domain-containing protein 180 [Caenorhabditis elegans]

      Status: REVIEWED

      Conserved Domains (1) summary
      pfam05109
      Location:268 → 377
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q19970.4

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