U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    F32D1.3 TPR_REGION domain-containing protein;dolichyl-phosphate-mannose--protein mannosyltransferase [ Caenorhabditis elegans ]

    Gene ID: 178832, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    F32D1.3
    Official Full Name
    TPR_REGION domain-containing protein;dolichyl-phosphate-mannose--protein mannosyltransferase
    Primary source
    WormBase:WBGene00017983
    Locus tag
    CELE_F32D1.3
    See related
    AllianceGenome:WB:WBGene00017983
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable mannosyltransferase activity. Predicted to be involved in protein O-linked mannosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TMTC2 (transmembrane O-mannosyltransferase targeting cadherins 2). [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See F32D1.3 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    8
    Sequence:
    Chromosome: V; NC_003283.11 (4349751..4361569, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene AAA domain-containing protein;Fidgetin-like protein 1;Spastin/Vps4 C-terminal domain-containing protein Neighboring gene ATP synthase subunit epsilon, mitochondrial Neighboring gene DNA replication licensing factor MCM7 Neighboring gene ncRNA Neighboring gene Ground-like domain-containing protein Neighboring gene Activin_recp domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mannosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein O-linked mannosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    TPR_REGION domain-containing protein;dolichyl-phosphate-mannose--protein mannosyltransferase
    NP_001317807.1
    • Confirmed by transcript evidence
    NP_504200.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4349751..4361569 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071799.5 → NP_504200.1  dolichyl-phosphate-mannose--protein mannosyltransferase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504200.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16296
      Conserved Domains (3) summary
      COG0457
      Location:448 → 748
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:655 → 681
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:244 → 316
      DUF1736; Domain of unknown function (DUF1736)

    2. NM_001330857.3 → NP_001317807.1  TPR_REGION domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A168H4S5
      Conserved Domains (1) summary
      sd00006
      Location:7 → 37
      TPR; TPR repeat [structural motif]

    RNA

    1. NR_138492.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools