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    Y38E10A.22 Armadillo-type protein;CID domain-containing protein;GLOBIN domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 189667, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y38E10A.22
    Official Full Name
    Armadillo-type protein;CID domain-containing protein;GLOBIN domain-containing protein
    Primary source
    WormBase:WBGene00012600
    Locus tag
    CELE_Y38E10A.22
    See related
    AllianceGenome:WB:WBGene00012600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable adenyl-nucleotide exchange factor activity. Predicted to be active in endoplasmic reticulum. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y38E10A.22 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003280.10 (12672790..12677810, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene RGS domain-containing protein Neighboring gene tRNA Neighboring gene tRNA Neighboring gene tRNA-Ala Neighboring gene ncRNA Neighboring gene Complex I-B12 Neighboring gene Nodule Cysteine-Rich (NCR) secreted peptide

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states. Tan D, et al. Elife, 2016 Mar 8. PMID 26952210, Free PMC Article
    2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables adenyl-nucleotide exchange factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Armadillo-type protein;CID domain-containing protein;GLOBIN domain-containing protein
    NP_001254352.2
    • Confirmed by transcript evidence
    NP_001254353.1
    • Confirmed by transcript evidence
    NP_001254354.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      12672790..12677810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001267423.6 → NP_001254352.2  Armadillo-type protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254352.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KMK6

    2. NM_001267424.3 → NP_001254353.1  CID domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254353.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9NAI9

    3. NM_001267425.4 → NP_001254354.2  GLOBIN domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254354.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      E8MDV8
    Nucleotide Protein
    Heading Accession and Version

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