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    grd-1 Ground-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181300, updated on 9-Dec-2024

    Summary

    Official Symbol
    grd-1
    Official Full Name
    Ground-like domain-containing protein
    Primary source
    WormBase:WBGene00001690
    Locus tag
    CELE_R08B4.1
    See related
    AllianceGenome:WB:WBGene00001690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Acts upstream of or within nematode male tail mating organ morphogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in rect_D; rect_VL; and rect_VR. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See grd-1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    15
    Sequence:
    Chromosome: X; NC_003284.9 (11109440..11115887)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene AbiV family abortive infection protein;DUF2959 domain-containing protein Neighboring gene Transmembrane 9 superfamily member Neighboring gene Neuropeptide-Like Protein Neighboring gene ncRNA

    General gene information

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in extracellular matrix  
    located_in extracellular region  

    General protein information

    Preferred Names
    Ground-like domain-containing protein
    NP_001024843.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      11109440..11115887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001029672.3NP_001024843.1  Ground-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024843.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q21835
      Conserved Domains (3) summary
      cd00081
      Location:9321080
      Hint; Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, ...
      pfam04155
      Location:436518
      Ground-like; Ground-like domain
      pfam14179
      Location:571638
      YppG; YppG-like protein
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