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    ttr-12 TransThyretin-Related family domain [ Caenorhabditis elegans ]

    Gene ID: 180348, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ttr-12
    Official Full Name
    TransThyretin-Related family domain
    Primary source
    WormBase:WBGene00009759
    Locus tag
    CELE_F46B3.4
    See related
    AllianceGenome:WB:WBGene00009759
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in cell surface and extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ttr-12 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (20607777..20608788, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Transthyretin-like family protein Neighboring gene TransThyretin-Related family domain Neighboring gene Neuropeptide-Like Protein Neighboring gene Ground-like domain-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TransThyretin-Related family domain
    NP_001256933.1
    • Product from WormBase gene class ttr;
      Confirmed by transcript evidence
    NP_001256934.1
    • Product from WormBase gene class ttr;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      20607777..20608788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001270004.2 → NP_001256933.1  TransThyretin-Related family domain [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256933.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XV18
      Conserved Domains (1) summary
      pfam01060
      Location:27 → 116
      TTR-52; Transthyretin-like family

    2. NM_001270005.1 → NP_001256934.1  TransThyretin-Related family domain [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256934.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1B6V6
      Conserved Domains (1) summary
      pfam01060
      Location:1 → 86
      TTR-52; Transthyretin-like family
    Nucleotide Protein
    Heading Accession and Version

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