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    C16C2.4 BSD domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172821, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C16C2.4
    Official Full Name
    BSD domain-containing protein
    Primary source
    WormBase:WBGene00007621
    Locus tag
    CELE_C16C2.4
    See related
    AllianceGenome:WB:WBGene00007621
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in TORC2 signaling and regulation of short-term neuronal synaptic plasticity. Predicted to be active in Golgi apparatus; nucleus; and synapse. Orthologous to human SYAP1 (synapse associated protein 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C16C2.4 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (9712811..9715232, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene RNase H type-1 domain-containing protein Neighboring gene CAAX prenyl protease 1 homolog Neighboring gene Rho-GAP domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RGS domain-containing protein;Regulator of G-protein signaling 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in TORC2 signaling IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of short-term neuronal synaptic plasticity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in synapse IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    BSD domain-containing protein
    NP_001348661.1
    • Confirmed by transcript evidence
    NP_492583.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      9712811..9715232 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001361824.4 → NP_001348661.1  BSD domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATM8
      Conserved Domains (1) summary
      smart00751
      Location:180 → 230
      BSD; domain in transcription factors and synapse-associated proteins

    2. NM_060182.8 → NP_492583.1  BSD domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_492583.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O17591
      Conserved Domains (1) summary
      smart00751
      Location:176 → 226
      BSD; domain in transcription factors and synapse-associated proteins
    Nucleotide Protein
    Heading Accession and Version

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