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    F01D5.10 Carbohydrate sulfotransferase [ Caenorhabditis elegans ]

    Gene ID: 184059, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F01D5.10
    Official Full Name
    Carbohydrate sulfotransferase
    Primary source
    WormBase:WBGene00008500
    Locus tag
    CELE_F01D5.10
    See related
    AllianceGenome:WB:WBGene00008500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable chondroitin 4-sulfotransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process and positive regulation of response to oxidative stress. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F01D5.10 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    8
    Sequence:
    Chromosome: II; NC_003280.10 (14017839..14021330, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Serine aminopeptidase S33 domain-containing protein Neighboring gene Serine aminopeptidase S33 domain-containing protein Neighboring gene CYtochrome P450 family Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Ski protein homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables chondroitin 4-sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in chondroitin sulfate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Carbohydrate sulfotransferase
    NP_496940.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      14017839..14021330 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064539.2 → NP_496940.1  Carbohydrate sulfotransferase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496940.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XVA5
      Conserved Domains (1) summary
      cl22970
      Location:115 → 345
      Sulfotransfer_2; Sulfotransferase family
    Nucleotide Protein
    Heading Accession and Version

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