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    zim-1 C2H2-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 3565259, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zim-1
    Official Full Name
    C2H2-type domain-containing protein
    Primary source
    WormBase:WBGene00011597
    Locus tag
    CELE_T07G12.6
    See related
    AllianceGenome:WB:WBGene00011597
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in meiotic chromosome segregation. Located in condensed nuclear chromosome. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See zim-1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    8
    Sequence:
    Chromosome: IV; NC_003282.8 (10547086..10555513)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Permease;Solute carrier family 23 member 2;Sulfate_transp domain-containing protein Neighboring gene pseudo Neighboring gene pseudo Neighboring gene C2H2-type domain-containing protein Neighboring gene C2H2-type domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene conversion and positive selection driving the evolution of the Caenorhabditis ssp. ZIM/HIM-8 protein family. Liu Q. J Mol Evol, 2009 Mar. PMID 19221684
    2. Caenorhabditis elegans spermatocytes can segregate achiasmate homologous chromosomes apart at higher than random frequency during meiosis I. Gong T, et al. Genetics, 2023 Apr 6. PMID 36792551, Free PMC Article
    3. Identification of chromosome sequence motifs that mediate meiotic pairing and synapsis in C. elegans. Phillips CM, et al. Nat Cell Biol, 2009 Aug. PMID 19620970, Free PMC Article
    4. A family of zinc-finger proteins is required for chromosome-specific pairing and synapsis during meiosis in C. elegans. Phillips CM, et al. Dev Cell, 2006 Dec. PMID 17141157
    5. Finding the correct partner: the meiotic courtship. Naranjo T. Scientifica (Cairo), 2012. PMID 24278707, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in meiotic chromosome segregation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in condensed nuclear chromosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in condensed nuclear chromosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C2H2-type domain-containing protein
    NP_001129869.1
    • Confirmed by transcript evidence
    NP_001263776.1
    • Confirmed by transcript evidence
    NP_001263777.1
    • Confirmed by transcript evidence
    NP_501948.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      10547086..10555513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001136397.5 → NP_001129869.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001129869.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B2MZC6

    2. NM_069547.5 → NP_501948.2  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501948.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O18064

    3. NM_001276847.3 → NP_001263776.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001263776.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      I2HAK0

    4. NM_001276848.3 → NP_001263777.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001263777.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      J3JZZ7
    Nucleotide Protein
    Heading Accession and Version

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