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    praf-3 PRA1 family protein [ Caenorhabditis elegans ]

    Gene ID: 177637, updated on 27-Dec-2024

    Summary

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    Official Symbol
    praf-3
    Official Full Name
    PRA1 family protein
    Primary source
    WormBase:WBGene00017070
    Locus tag
    CELE_D2096.2
    See related
    AllianceGenome:WB:WBGene00017070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in membrane. Orthologous to human ARL6IP5 (ARF like GTPase 6 interacting protein 5) and PRAF2 (PRA1 domain family member 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See praf-3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (8379983..8381936)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene DDE-1 domain-containing protein;ELYS domain-containing protein;FA_FANCE domain-containing protein;Uncharacterized protein Neighboring gene Nucleosome assembly protein 1-like 1 Neighboring gene ncRNA Neighboring gene Neuropeptide-Like Protein Neighboring gene C6 domain-containing protein Neighboring gene GAR domain-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PRA1 family protein
    NP_001023104.1
    • Confirmed by transcript evidence
    NP_001370621.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      8379983..8381936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001383143.1 → NP_001370621.1  PRA1 family protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q4TTA9
      Conserved Domains (1) summary
      cl02137
      Location:8 → 55
      PRA1; PRA1 family protein

    2. NM_001027933.4 → NP_001023104.1  PRA1 family protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023104.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZJ7
      Conserved Domains (1) summary
      pfam03208
      Location:15 → 158
      PRA1; PRA1 family protein
    Nucleotide Protein
    Heading Accession and Version

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