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    tag-280 Transmembrane protein [ Caenorhabditis elegans ]

    Gene ID: 174885, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tag-280
    Official Full Name
    Transmembrane protein
    Primary source
    WormBase:WBGene00044322
    Locus tag
    CELE_F15A4.12
    See related
    AllianceGenome:WB:WBGene00044322
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in positive regulation of plasminogen activation. Predicted to be located in plasma membrane. Orthologous to human PLGRKT (plasminogen receptor with a C-terminal lysine). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See tag-280 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003280.10 (12460652..12461471)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Serpentine receptor class epsilon-38 Neighboring gene Uncharacterized protein Neighboring gene F-box domain-containing protein Neighboring gene Serpentine receptor class epsilon-37 Neighboring gene Serpentine receptor class gamma-16

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in positive regulation of plasminogen activation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of plasminogen activation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Transmembrane protein
    NP_496653.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      12460652..12461471
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064252.5 → NP_496653.1  Transmembrane protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496653.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U3J2
      Conserved Domains (1) summary
      pfam10166
      Location:1 → 129
      DUF2368; uncharacterized conserved protein (DUF2368)
    Nucleotide Protein
    Heading Accession and Version

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