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    • Showing Current items.

    fbxa-150 F-box domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 189692, updated on 9-Dec-2024

    Summary

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    Official Symbol
    fbxa-150
    Official Full Name
    F-box domain-containing protein
    Primary source
    WormBase:WBGene00012624
    Locus tag
    CELE_Y38H6C.11
    See related
    AllianceGenome:WB:WBGene00012624
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in innate immune response. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See fbxa-150 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (20522598..20524512)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene FTH domain-containing protein Neighboring gene DUF38 domain-containing protein Neighboring gene Serpentine Receptor, class H Neighboring gene Transposase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
    2. The F-box protein family. Kipreos ET, et al. Genome Biol, 2000. PMID 11178263, Free PMC Article
    3. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response HEP PubMed 

    General protein information

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    Preferred Names
    F-box domain-containing protein
    NP_507954.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      20522598..20524512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075553.2 → NP_507954.1  F-box domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507954.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XX49
      Conserved Domains (1) summary
      pfam00646
      Location:28 → 75
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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