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    C05D10.4 Uncharacterized protein [ Caenorhabditis elegans ]

    Gene ID: 175860, updated on 18-Sep-2024

    Summary

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    Official Symbol
    C05D10.4
    Official Full Name
    Uncharacterized protein
    Primary source
    WormBase:WBGene00015480
    Locus tag
    CELE_C05D10.4
    See related
    AllianceGenome:WB:WBGene00015480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See C05D10.4 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    12
    Sequence:
    Chromosome: III; NC_003281.10 (6088683..6102862, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Mitogen-activated protein kinase 15 Neighboring gene AT hook-containing protein attf-4 Neighboring gene ABC transporter ATP-binding protein/permease wht-1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Glycylpeptide N-tetradecanoyltransferase;putative glycylpeptide N-tetradecanoyltransferase Neighboring gene Serine/threonine-protein kinase SULU Neighboring gene GHMP kinase C-terminal domain-containing protein;MeValonate Kinase;Mevalonate kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Shifted Transversal Design smart-pooling for high coverage interactome mapping. Xin X, et al. Genome Res, 2009 Jul. PMID 19447967, Free PMC Article
    2. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Uncharacterized protein
    NP_001367436.1
    • Confirmed by transcript evidence
    NP_498323.2
    • Confirmed by transcript evidence
    NP_741170.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6088683..6102862 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001379743.1 → NP_001367436.1  Uncharacterized protein CELE_C05D10.4 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q11181, Q8T3F3, Q8T3F4, Q8T3F5
      Conserved Domains (1) summary
      smart00454
      Location:354 → 419
      SAM; Sterile alpha motif

    2. NM_065922.6 → NP_498323.2  Uncharacterized protein CELE_C05D10.4 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498323.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q11181, Q8T3F3, Q8T3F4, Q8T3F5
      Conserved Domains (2) summary
      cd09487
      Location:374 → 424
      SAM_superfamily; SAM (Sterile alpha motif )
      smart00454
      Location:367 → 432
      SAM; Sterile alpha motif

    3. NM_171149.5 → NP_741170.1  Uncharacterized protein CELE_C05D10.4 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741170.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q11181
      Conserved Domains (2) summary
      cd09487
      Location:227 → 277
      SAM_superfamily; SAM (Sterile alpha motif )
      smart00454
      Location:220 → 285
      SAM; Sterile alpha motif
    Nucleotide Protein
    Heading Accession and Version

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