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    Sdr39u1 short chain dehydrogenase/reductase family 39U, member 1 [ Mus musculus (house mouse) ]

    Gene ID: 654795, updated on 9-Dec-2024

    Summary

    Official Symbol
    Sdr39u1provided by MGI
    Official Full Name
    short chain dehydrogenase/reductase family 39U, member 1provided by MGI
    Primary source
    MGI:MGI:1916876
    See related
    Ensembl:ENSMUSG00000022223 AllianceGenome:MGI:1916876
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310014G06Rik
    Summary
    Predicted to enable oxidoreductase activity. Orthologous to human SDR39U1 (short chain dehydrogenase/reductase family 39U member 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 39.4), kidney adult (RPKM 36.4) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Sdr39u1 in Genome Data Viewer
    Location:
    14 C3; 14 28.19 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (56134742..56137802, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (55897283..55900342, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene NYN domain and retroviral integrase containing Neighboring gene STARR-positive B cell enhancer ABC_E7318 Neighboring gene STARR-positive B cell enhancer ABC_E7319 Neighboring gene cerebellin 3 precursor protein Neighboring gene KH and NYN domain containing Neighboring gene STARR-seq mESC enhancer starr_36786 Neighboring gene chymase 1, mast cell Neighboring gene mast cell protease, pseudogene 1 Neighboring gene chymase 2, mast cell

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General protein information

    Preferred Names
    epimerase family protein SDR39U1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082975.1NP_001076444.1  epimerase family protein SDR39U1 isoform 1

      See identical proteins and their annotated locations for NP_001076444.1

      Status: VALIDATED

      Source sequence(s)
      AI843700, AK049709, BY127480
      Consensus CDS
      CCDS36935.1
      UniProtKB/Swiss-Prot
      Q3V467, Q5M8N4, Q8BWX0
      Related
      ENSMUSP00000106957.4, ENSMUST00000111325.5
      Conserved Domains (1) summary
      cd05242
      Location:2292
      SDR_a8; atypical (a) SDRs, subgroup 8
    2. NM_001374224.1NP_001361153.1  epimerase family protein SDR39U1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC098877
      Conserved Domains (1) summary
      cl21454
      Location:2185
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      56134742..56137802 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158783.1XP_036014676.1  epimerase family protein SDR39U1 isoform X1

      Conserved Domains (1) summary
      cl21454
      Location:2185
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    2. XM_030247918.2XP_030103778.1  epimerase family protein SDR39U1 isoform X1

      Conserved Domains (1) summary
      cl21454
      Location:2185
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    3. XM_036158782.1XP_036014675.1  epimerase family protein SDR39U1 isoform X1

      Conserved Domains (1) summary
      cl21454
      Location:2185
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    4. XM_036158781.1XP_036014674.1  epimerase family protein SDR39U1 isoform X1

      Conserved Domains (1) summary
      cl21454
      Location:2185
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins