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    GID12 Gid12p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 851378, updated on 9-Dec-2024

    Summary

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    Official Symbol
    GID12
    Official Full Name
    Gid12p
    Primary source
    SGD:S000002335
    Locus tag
    YDL176W
    See related
    AllianceGenome:SGD:S000002335; FungiDB:YDL176W; VEuPathDB:YDL176W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    IPF1
    Summary
    Involved in actin cortical patch assembly. Acts upstream of or within regulation of protein-containing complex assembly. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See GID12 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_001136.10 (142097..144223)

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene D-lactate dehydrogenase Neighboring gene uncharacterized protein Neighboring gene TRAMP complex RNA-binding subunit Neighboring gene D-lactate dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001136.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic genetics and single-cell imaging reveal widespread morphological pleiotropy and cell-to-cell variability. Mattiazzi Usaj M, et al. Mol Syst Biol, 2020 Feb. PMID 32064787, Free PMC Article
    2. From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions. Ulitsky I, et al. Mol Syst Biol, 2008. PMID 18628749, Free PMC Article
    3. Cryo-EM structures of Gid12-bound GID E3 reveal steric blockade as a mechanism inhibiting substrate ubiquitylation. Qiao S, et al. Nat Commun, 2022 Jun 1. PMID 35650207, Free PMC Article
    4. PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs. Pitre S, et al. BMC Bioinformatics, 2006 Jul 27. PMID 16872538, Free PMC Article
    5. Bayesian Markov Random Field analysis for protein function prediction based on network data. Kourmpetis YA, et al. PLoS One, 2010 Feb 24. PMID 20195360, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in actin cortical patch assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of protein-containing complex assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Gid12p
    NP_010105.1
    • hypothetical protein involved in regulating assembly of Gid4p into the GID E3 ligase complex; interacts with GID complex components; involved in actin patch formation; computationally predicted to be involved in fructose-1,6-bisphosphatase (Fbp1p) degradation; non-essential gene

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10 Reference assembly

      Range
      142097..144223
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001180236.1 → NP_010105.1  TPA: Gid12p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_010105.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VRH6, Q12027
      UniProtKB/TrEMBL
      A6ZXF5, B3LH60, B5VF96, C7GL22, C8Z6C8, G2WBY9, N1P8Y3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q12027.1

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