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    CIC capicua transcriptional repressor [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102558185, updated on 8-May-2024

    Summary

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    Gene symbol
    CIC
    Gene description
    capicua transcriptional repressor
    Locus tag
    Y1Q_0019042
    See related
    EnsemblRapid:ENSAMIG00015001461
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Also known as
    CICA
    Orthologs
    human mouse all
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    Genomic context

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    See CIC in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 15 NC_081838.1 (30787337..30804188)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709817.1 (234..7263)

    Chromosome 15 - NC_081838.1Genomic Context describing neighboring genes Neighboring gene glycogen synthase kinase 3 alpha Neighboring gene ETS2 repressor factor Neighboring gene guanylate-binding protein 1 Neighboring gene DMRT like family C2 Neighboring gene guanylate-binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein capicua homolog
    Names
    capicua-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081838.1 Reference rAllMis1 Primary Assembly

      Range
      30787337..30804188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059719188.1 → XP_059575171.1  protein capicua homolog isoform X1

    2. XM_059719191.1 → XP_059575174.1  protein capicua homolog isoform X2

    3. XM_059719192.1 → XP_059575175.1  protein capicua homolog isoform X3

    4. XM_059719193.1 → XP_059575176.1  protein capicua homolog isoform X4

      Related
      ENSAMIP00015001649.1, ENSAMIT00015002439.1

    5. XM_059719195.1 → XP_059575178.1  protein capicua homolog isoform X6

    6. XM_059719194.1 → XP_059575177.1  protein capicua homolog isoform X5

    7. XM_059719189.1 → XP_059575172.1  protein capicua homolog isoform X1

      Related
      ENSAMIP00015001647.1, ENSAMIT00015002437.1

    8. XM_059719190.1 → XP_059575173.1  protein capicua homolog isoform X1

    Nucleotide Protein
    Heading Accession and Version

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