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    LOC107984272 uncharacterized LOC107984272 [ Homo sapiens (human) ]

    Gene ID: 107984272, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC107984272
    Gene description
    uncharacterized LOC107984272
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC107984272 in Genome Data Viewer
    Location:
    10q25.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (115023020..115062635)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (115917279..115956891)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 1121, pseudogene Neighboring gene uncharacterized LOC124902509 Neighboring gene TruB pseudouridine synthase family member 1 Neighboring gene long intergenic non-protein coding RNA 2626 Neighboring gene uncharacterized LOC105378496 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2850 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2851 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2852 Neighboring gene attractin like 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:117011521-117011641 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2853 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:117295260-117296459 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:117346410-117346910 Neighboring gene NANOG hESC enhancer GRCh37_chr10:117560834-117561335 Neighboring gene N-terminal asparagine amidase pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      115023020..115062635
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001747595.1 RNA Sequence

    2. XR_001747594.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      115917279..115956891
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007080875.1 RNA Sequence

    2. XR_007080874.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
    Molecular Biology Databases