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    LOC90246 uncharacterized LOC90246 [ Homo sapiens (human) ]

    Gene ID: 90246, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC90246
    Gene description
    uncharacterized LOC90246
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See LOC90246 in Genome Data Viewer
    Location:
    3q21.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (128507835..128510595)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (131249397..131252157)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (128226678..128229438)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene DNAJB8 antisense RNA 1 Neighboring gene DnaJ heat shock protein family (Hsp40) member B8 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128202328-128202892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128202893-128203457 Neighboring gene CRISPRi-FlowFISH-validated H1-10 regulatory element 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128208361-128209172 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128209173-128209982 Neighboring gene GATA binding protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14707 Neighboring gene GATA2 antisense RNA 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:128223035-128224234 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128243441-128243940 Neighboring gene CRISPRi-FlowFISH-validated RPN1 regulatory element 3 Neighboring gene transmembrane p24 trafficking protein 10 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128266479-128266979 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128285743-128286421 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128287100-128287778 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128287779-128288455 Neighboring gene long intergenic non-protein coding RNA 1565

    Genomic regions, transcripts, and products

    Phenotypes

    EBI GWAS Catalog

    Description
    Multiple loci are associated with white blood cell phenotypes.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026954.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC080005

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      128507835..128510595
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      131249397..131252157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)