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    ZEB1-AS1 ZEB1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 220930, updated on 22-Oct-2024

    Summary

    Official Symbol
    ZEB1-AS1provided by HGNC
    Official Full Name
    ZEB1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:42354
    See related
    Ensembl:ENSG00000237036 MIM:616915; AllianceGenome:HGNC:42354
    Gene type
    ncRNA
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This locus produces long non-coding RNA that is transcribed from a shared bi-directional promoter with zinc finger E-box binding homeobox 1 (ZEB1). This transcript binds lysine methyltransferase 2A and promotes histone modifications that are thought to promote expression of ZEB1. Expression of this gene is correlated with tumor progression. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2017]
    Expression
    Ubiquitous expression in endometrium (RPKM 3.5), ovary (RPKM 3.4) and 25 other tissues See more
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    Genomic context

    See ZEB1-AS1 in Genome Data Viewer
    Location:
    10p11.22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (31307717..31320447, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (31337455..31350185, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (31596646..31609376, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376481 Neighboring gene uncharacterized LOC105376482 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2272 Neighboring gene uncharacterized LOC105376483 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2273 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31435102-31435653 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31435654-31436204 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3235 Neighboring gene long intergenic non-protein coding RNA 2664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31498085-31498585 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:31531588-31532787 Neighboring gene RNA, 5S ribosomal pseudogene 309 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2274 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2275 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2276 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3236 Neighboring gene POM121 transmembrane nucleoporin like, pseudogene Neighboring gene zinc finger E-box binding homeobox 1 Neighboring gene serine palmitoyltransferase long chain base subunit 1 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024284.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AK026657, BX446976, DB121883, DB127940
      Related
      ENST00000659795.2
    2. NR_148975.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AK026657, DA998606
    3. NR_148976.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AI808408, AK026657, AW005512
    4. NR_148977.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AK026657, DB121883, DC351677
      Related
      ENST00000607166.2
    5. NR_148978.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AI149234, BM703926, DB121883
      Related
      ENST00000450834.4
    6. NR_148979.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL117340
      Related
      ENST00000424191.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      31307717..31320447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      31337455..31350185 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)