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    LOC102168270 N-acetyllactosaminide alpha-1,3-galactosyltransferase [ Capra hircus (goat) ]

    Gene ID: 102168270, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC102168270
    Gene description
    N-acetyllactosaminide alpha-1,3-galactosyltransferase
    See related
    EnsemblRapid:ENSCHIG00000023562
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capra hircus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
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    Genomic context

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    See LOC102168270 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current ASM170441v1 (GCF_001704415.1) 11 NC_030818.1 (91919991..91991657, complement)
    101 previous assembly CHIR_1.0 (GCF_000317765.1) 11 NC_022303.1 (90942786..91013078, complement)

    Chromosome 11 - NC_030818.1Genomic Context describing neighboring genes Neighboring gene PC4 and SFRS1-interacting protein pseudogene Neighboring gene N-acetyllactosaminide alpha-1,3-galactosyltransferase-like Neighboring gene uncharacterized LOC108637163 Neighboring gene DAB2 interacting protein Neighboring gene tubulin tyrosine ligase like 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    N-acetyllactosaminide alpha-1,3-galactosyltransferase; uncharacterized protein LOC102168270

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM170441v1 Primary Assembly

    Genomic

    1. NC_030818.1 Reference ASM170441v1 Primary Assembly

      Range
      91919991..91991657 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018055705.1 → XP_017911194.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

      UniProtKB/TrEMBL
      A0AAJ7NYE4
      Related
      ENSCHIP00000027782.2, ENSCHIT00000035650.2

    2. XM_018055706.1 → XP_017911195.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X2

      UniProtKB/TrEMBL
      A0A452FUH0

    3. XM_005687037.3 → XP_005687094.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X2

      UniProtKB/TrEMBL
      A0A452FUH0
      Related
      ENSCHIP00000053956.1, ENSCHIT00000052825.1
      Conserved Domains (1) summary
      pfam03414
      Location:83 → 366
      Glyco_transf_6; Glycosyltransferase family 6

    4. XM_018055707.1 → XP_017911196.1  uncharacterized protein LOC102168270 isoform X3

      UniProtKB/TrEMBL
      A0AAJ7KG98
    Nucleotide Protein
    Heading Accession and Version

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