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    RTF2 RING-finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835914, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RTF2 RING-finger protein
    Primary source
    TAIR:AT5G58020
    Locus tag
    AT5G58020
    See related
    Araport:AT5G58020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2C19.3; F2C19_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (23485496..23486818)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Cytochrome c oxidase, subunit Vib family protein Neighboring gene LJRHL1-like 3 Neighboring gene Transport protein particle (TRAPP) component Neighboring gene FIP1[V]-like protein Neighboring gene SHV3-like 4 Neighboring gene SNARE-like superfamily protein Neighboring gene temperature-induced lipocalin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Rtf2 Domain-Containing Protein Influences Pre-mRNA Splicing and Is Essential for Embryonic Development in Arabidopsis thaliana. Sasaki T, et al. Genetics, 2015 Jun. PMID 25819795, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_125187.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within alternative mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mitotic DNA replication termination IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RTF2 RING-finger protein
    NP_200610.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23485496..23486818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125187.4 → NP_200610.1  RTF2 RING-finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200610.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAJ7, A0A654GCH3, Q6NQ98
      Conserved Domains (1) summary
      pfam04641
      Location:94 → 337
      Rtf2; Rtf2 RING-finger
    Nucleotide Protein
    Heading Accession and Version

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