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    ECU08_1400 uncharacterized protein [ Encephalitozoon cuniculi GB-M1 ]

    Gene ID: 859690, updated on 17-May-2024

    Summary

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    Gene symbol
    ECU08_1400
    Gene description
    uncharacterized protein
    Locus tag
    ECU08_1400
    See related
    MicrosporidiaDB:ECU08_1400; VEuPathDB:ECU08_1400
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Encephalitozoon cuniculi GB-M1 (isolate: GB-M1)
    Lineage
    Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon
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    Genomic context

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    See ECU08_1400 in Genome Data Viewer
    Location:
    chromosome: VIII
    Exon count:
    1
    Sequence:
    Chromosome: VIII; NC_003235.1 (156477..157175, complement)

    Chromosome VIII - NC_003235.1Genomic Context describing neighboring genes Neighboring gene glutaredoxin Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene phosphoinositide polyphosphatase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003235.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation. Peyretaillade E, et al. BMC Genomics, 2009 Dec 15. PMID 20003517, Free PMC Article
    2. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Katinka MD, et al. Nature, 2001 Nov 22. PMID 11719806
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_597268.1
    • 08_1400, SIMILAR TO GATA BINDING FACTOR-1 (GATA-type transcription factor), GAF1_SCHPO, gene found by Glimmer

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003235.1 Reference assembly

      Range
      156477..157175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001041877.1 → NP_597268.1  uncharacterized protein ECU08_1400 [Encephalitozoon cuniculi GB-M1]

      See identical proteins and their annotated locations for NP_597268.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      M1KIS4, Q8SUM6
      Conserved Domains (2) summary
      COG5641
      Location:3 → 230
      GAT1; GATA Zn-finger-containing transcription factor [Transcription]
      cd00202
      Location:7 → 57
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    Nucleotide Protein
    Heading Accession and Version

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