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    LOC104815985 40S ribosomal protein S15-4-like [ Tarenaya hassleriana ]

    Gene ID: 104815985, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC104815985
    Gene description
    40S ribosomal protein S15-4-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tarenaya hassleriana
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; New World clade; Tarenaya
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    Genomic context

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    See LOC104815985 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current ASM46358v1 (GCF_000463585.1) Unplaced Scaffold NW_010965696.1 (2110158..2114319, complement)

    NW_010965696.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g02750-like Neighboring gene auxin-responsive protein IAA4-like Neighboring gene uncharacterized LOC104815984 Neighboring gene MATH domain-containing protein At5g43560

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_010965696.1 Unplaced Scaffold Reference ASM46358v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosomal small subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S15-4-like; uncharacterized protein LOC104815985

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tarenaya hassleriana Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM46358v1

    Genomic

    1. NW_010965696.1 Reference ASM46358v1

      Range
      2110158..2114319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010544623.2 → XP_010542925.1  uncharacterized protein LOC104815985 isoform X1

      Conserved Domains (2) summary
      PTZ00096
      Location:261 → 401
      PTZ00096; 40S ribosomal protein S15; Provisional
      pfam03126
      Location:85 → 183
      Plus-3; Plus-3 domain

    2. XM_010544625.1 → XP_010542927.1  40S ribosomal protein S15-4-like isoform X2

      Conserved Domains (1) summary
      PTZ00096
      Location:55 → 195
      PTZ00096; 40S ribosomal protein S15; Provisional
    Nucleotide Protein
    Heading Accession and Version

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