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    Trim34 tripartite motif containing 34 [ Castor canadensis (American beaver) ]

    Gene ID: 109687290, updated on 14-Mar-2024

    Summary

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    Gene symbol
    Trim34
    Gene description
    tripartite motif containing 34
    See related
    Ensembl:ENSCCNG00000026917
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Castor canadensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
    Also known as
    TRIM34A
    Orthologs
    human all
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    Genomic context

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    See Trim34 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870579.1 (687679..701427)

    NW_017870579.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM31-like Neighboring gene tripartite motif containing 6 Neighboring gene olfactory receptor 52H1-like Neighboring gene olfactory receptor 52H1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_017870579.1 Unplaced Scaffold Reference C.can genome v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 34
    Names
    tripartite motif-containing protein 34A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.can genome v1.0

    Genomic

    1. NW_017870579.1 Reference C.can genome v1.0

      Range
      687679..701427
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020165121.1 → XP_020020710.1  tripartite motif-containing protein 34

      UniProtKB/TrEMBL
      A0A250YJ22
      Conserved Domains (4) summary
      cd00021
      Location:95 → 131
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd16591
      Location:12 → 61
      RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
      cl02614
      Location:300 → 483
      SPRY; SPRY domain
      cl25732
      Location:133 → 238
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_020165120.1 → XP_020020709.1  tripartite motif-containing protein 34

      UniProtKB/TrEMBL
      A0A250YJ22
      Related
      ENSCCNP00000027866.1, ENSCCNT00000035245.1
      Conserved Domains (4) summary
      cd00021
      Location:95 → 131
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd16591
      Location:12 → 61
      RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
      cl02614
      Location:300 → 483
      SPRY; SPRY domain
      cl25732
      Location:133 → 238
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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