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    PVX_091350 rhomboid-like protease 1, putative [ Plasmodium vivax (malaria parasite P. vivax) ]

    Gene ID: 5474557, updated on 5-Sep-2024

    Summary

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    Gene symbol
    PVX_091350
    Gene description
    rhomboid-like protease 1, putative
    Locus tag
    PVX_091350
    See related
    PlasmoDB:PVX_091350; VEuPathDB:PVX_091350
    Gene type
    protein coding
    RNA name
    rhomboid-like protease 1, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium vivax (strain: Salvador I)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium)
    Orthologs
    Plasmodium falciparum all
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    Genomic context

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    See PVX_091350 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Sequence:
    Chromosome: 9; NC_009914.1 (446970..448860)

    Chromosome 9 - NC_009914.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 2, putative Neighboring gene dynein light chain type 2, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009914.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Carlton JM, et al. Nature, 2008 Oct 9. PMID 18843361, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Repeated regions

    • Loc: 447441-447483 rpt_type = tandem , rpt_unit_seq = cga , satellite = microsatellite

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rhomboid-like protease 1, putative
    XP_001615261.1
    • encoded by transcript PVX_091350A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009914.1 Reference assembly

      Range
      446970..448860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001615211.1 → XP_001615261.1  rhomboid-like protease 1, putative [Plasmodium vivax]

      See identical proteins and their annotated locations for XP_001615261.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0J9SMX5, A0A0J9TCH2, A0A0J9TXU9, A0A0J9V3Q3, A0A1G4HCK4, A0A1U9XK03, A0A1U9XK11, A0A1U9XK45, A5K4F6
      Conserved Domains (1) summary
      PTZ00101
      Location:1 → 276
      PTZ00101; rhomboid-1 protease; Provisional
    Nucleotide Protein
    Heading Accession and Version

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