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    LOC110045237 death-inducer obliterator 1-like [ Orbicella faveolata ]

    Gene ID: 110045237, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC110045237
    Gene description
    death-inducer obliterator 1-like
    See related
    EnsemblRapid:LOC110045237
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Orbicella faveolata
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Faviina; Merulinidae; Orbicella
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    Genomic context

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    See LOC110045237 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current ofav_dov_v1 (GCF_002042975.1) Unplaced Scaffold NW_018148974.1 (216230..242888)

    NW_018148974.1Genomic Context describing neighboring genes Neighboring gene myosin-IIIb-like Neighboring gene uncharacterized LOC110045241 Neighboring gene uncharacterized LOC110045242 Neighboring gene death-inducer obliterator 1-like Neighboring gene uncharacterized LOC110045249

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018148974.1 Unplaced Scaffold Reference ofav_dov_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    death-inducer obliterator 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Orbicella faveolata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ofav_dov_v1 Primary Assembly

    Genomic

    1. NW_018148974.1 Reference ofav_dov_v1 Primary Assembly

      Range
      216230..242888
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020750835.1 → XP_020606494.1  death-inducer obliterator 1-like isoform X3

      Related
      XP_020606494.1, XM_020750835.1
      Conserved Domains (6) summary
      cd15552
      Location:646 → 695
      PHD_PHF3_like; PHD finger found in PHD finger protein 3 (PHF3), and death-inducer obliterator variants Dido1, Dido2, and Dido3
      pfam07500
      Location:972 → 1081
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:1227 → 1376
      SPOC; SPOC domain
      cl02688
      Location:912 → 950
      BRK; BRK domain
      cl26511
      Location:180 → 629
      Neuromodulin_N; Gap junction protein N-terminal region
      cl28033
      Location:1571 → 1937
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    2. XM_020750833.1 → XP_020606492.1  death-inducer obliterator 1-like isoform X1

      Related
      XP_020606492.1, XM_020750833.1
      Conserved Domains (6) summary
      cd15552
      Location:646 → 695
      PHD_PHF3_like; PHD finger found in PHD finger protein 3 (PHF3), and death-inducer obliterator variants Dido1, Dido2, and Dido3
      pfam07500
      Location:975 → 1084
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:1230 → 1379
      SPOC; SPOC domain
      cl02688
      Location:915 → 953
      BRK; BRK domain
      cl26511
      Location:180 → 629
      Neuromodulin_N; Gap junction protein N-terminal region
      cl28033
      Location:1574 → 1940
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    3. XM_020750834.1 → XP_020606493.1  death-inducer obliterator 1-like isoform X2

      Related
      XP_020606493.1, XM_020750834.1
      Conserved Domains (6) summary
      cd15552
      Location:646 → 695
      PHD_PHF3_like; PHD finger found in PHD finger protein 3 (PHF3), and death-inducer obliterator variants Dido1, Dido2, and Dido3
      pfam07500
      Location:973 → 1082
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:1228 → 1377
      SPOC; SPOC domain
      cl02688
      Location:913 → 951
      BRK; BRK domain
      cl26511
      Location:180 → 629
      Neuromodulin_N; Gap junction protein N-terminal region
      cl28033
      Location:1572 → 1938
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
    Nucleotide Protein
    Heading Accession and Version

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