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    DXS 1-D-deoxyxylulose 5-phosphate synthase [ Solanum lycopersicum (tomato) ]

    Gene ID: 544220, updated on 1-Nov-2024

    Summary

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    Gene symbol
    DXS
    Gene description
    1-D-deoxyxylulose 5-phosphate synthase
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See DXS in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 1 NC_090800.1 (73138279..73142539, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 1 NC_015438.3 (76679187..76683446, complement)

    Chromosome 1 - NC_090800.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101247458 Neighboring gene uncharacterized LOC104647335 Neighboring gene uncharacterized LOC112941373 Neighboring gene rapid alkalinization factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interference with Clp protease impairs carotenoid accumulation during tomato fruit ripening. D'Andrea L, et al. J Exp Bot, 2018 Mar 24. PMID 29385595, Free PMC Article
    2. Metabolic engineering of the mevalonate and non-mevalonate isopentenyl diphosphate-forming pathways for the production of health-promoting isoprenoids in tomato. Enfissi EM, et al. Plant Biotechnol J, 2005 Jan. PMID 17168896
    3. The isogene 1-deoxy-D-xylulose 5-phosphate synthase 2 controls isoprenoid profiles, precursor pathway allocation, and density of tomato trichomes. Paetzold H, et al. Mol Plant, 2010 Sep. PMID 20591838
    4. Carotenoid biosynthesis during tomato fruit development: regulatory role of 1-deoxy-D-xylulose 5-phosphate synthase. Lois LM, et al. Plant J, 2000 Jun. PMID 10886770
    5. Bioinformatics study of 1-deoxy-D-xylulose-5-phosphate synthase (DXS) genes in Solanaceae. Pan X, et al. Mol Biol Rep, 2019 Oct. PMID 31313133

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-deoxy-D-xylulose-5-phosphate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chlorophyll biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in terpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1-D-deoxyxylulose 5-phosphate synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001247743.2 → NP_001234672.1  1-D-deoxyxylulose 5-phosphate synthase

      See identical proteins and their annotated locations for NP_001234672.1

      Status: VALIDATED

      Source sequence(s)
      AF143812, AI774487, DB680862
      UniProtKB/TrEMBL
      C7U110, Q9XH50
      Conserved Domains (4) summary
      cd07033
      Location:415 → 557
      TPP_PYR_DXS_TK_like; Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins
      PLN02582
      Location:50 → 719
      PLN02582; 1-deoxy-D-xylulose-5-phosphate synthase
      pfam02780
      Location:577 → 700
      Transketolase_C; Transketolase, C-terminal domain
      pfam13292
      Location:76 → 361
      DXP_synthase_N; 1-deoxy-D-xylulose-5-phosphate synthase

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090800.1 Reference SLM_r2.1 Primary Assembly

      Range
      73138279..73142539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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