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    LOC9310331 B3 domain-containing protein At5g25475 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9310331, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9310331
    Gene description
    B3 domain-containing protein At5g25475
    Locus tag
    ARALYDRAFT_489405
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9310331 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (11432749..11434806, complement)

    NW_003302550.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PBL8 Neighboring gene probable serine/threonine-protein kinase PBL4 Neighboring gene uncharacterized LOC9310330 Neighboring gene B3 domain-containing protein At5g25470 Neighboring gene tRNA (cytosine(38)-C(5))-methyltransferase Neighboring gene zinc finger Ran-binding domain-containing protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B3 domain-containing protein At5g25475

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302550.1 Reference v.1.0 Primary Assembly

      Range
      11432749..11434806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021020537.1 → XP_020876196.1  B3 domain-containing protein At5g25475

      UniProtKB/TrEMBL
      D7M3Z6
      Conserved Domains (2) summary
      smart01019
      Location:19 → 113
      B3; B3 DNA binding domain
      pfam04598
      Location:147 → 205
      Gasdermin; Gasdermin family

    2. XM_021020538.1 → XP_020876197.1  B3 domain-containing protein At5g25475

      UniProtKB/TrEMBL
      D7M3Z6
      Conserved Domains (2) summary
      smart01019
      Location:19 → 113
      B3; B3 DNA binding domain
      pfam04598
      Location:147 → 205
      Gasdermin; Gasdermin family

    3. XM_021020540.1 → XP_020876199.1  B3 domain-containing protein At5g25475

      UniProtKB/TrEMBL
      D7M3Z6
      Conserved Domains (2) summary
      smart01019
      Location:19 → 113
      B3; B3 DNA binding domain
      pfam04598
      Location:147 → 205
      Gasdermin; Gasdermin family

    4. XM_021020539.1 → XP_020876198.1  B3 domain-containing protein At5g25475

      UniProtKB/TrEMBL
      D7M3Z6
      Conserved Domains (2) summary
      smart01019
      Location:19 → 113
      B3; B3 DNA binding domain
      pfam04598
      Location:147 → 205
      Gasdermin; Gasdermin family
    Nucleotide Protein
    Heading Accession and Version

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