U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Itpripl1 inositol 1,4,5-triphosphate receptor interacting protein-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 73338, updated on 9-Dec-2024

    Summary

    Official Symbol
    Itpripl1provided by MGI
    Official Full Name
    inositol 1,4,5-triphosphate receptor interacting protein-like 1provided by MGI
    Primary source
    MGI:MGI:1920588
    See related
    Ensembl:ENSMUSG00000074825 AllianceGenome:MGI:1920588
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700041B20Rik
    Summary
    Predicted to be active in membrane. Orthologous to human ITPRIPL1 (ITPRIP like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 9.7), mammary gland adult (RPKM 5.0) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Itpripl1 in Genome Data Viewer
    Location:
    2 F1; 2 61.79 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (126980689..126985377, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (127138769..127143457, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene non-SMC condensin I complex, subunit H Neighboring gene STARR-positive B cell enhancer ABC_E3400 Neighboring gene STARR-seq mESC enhancer starr_05620 Neighboring gene predicted gene, 35347 Neighboring gene STARR-positive B cell enhancer ABC_E8792 Neighboring gene STARR-seq mESC enhancer starr_05621 Neighboring gene RIKEN cDNA 1810024B03 gene Neighboring gene STARR-positive B cell enhancer ABC_E3401 Neighboring gene small nuclear ribonucleoprotein 200 (U5)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    inositol 1,4,5-trisphosphate receptor-interacting protein-like 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163527.1NP_001156999.1  inositol 1,4,5-trisphosphate receptor-interacting protein-like 1 isoform a precursor

      See identical proteins and their annotated locations for NP_001156999.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1 and 2 both encode the same isoform (a).
      Source sequence(s)
      AL928590
      Consensus CDS
      CCDS50701.1
      UniProtKB/Swiss-Prot
      A1L3P2, A2ASA8, B7ZCY2
      Related
      ENSMUSP00000106016.2, ENSMUST00000110386.2
      Conserved Domains (1) summary
      pfam03281
      Location:287514
      Mab-21; Mab-21 protein
    2. NM_001163528.1NP_001157000.1  inositol 1,4,5-trisphosphate receptor-interacting protein-like 1 isoform a precursor

      See identical proteins and their annotated locations for NP_001157000.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same isoform (a).
      Source sequence(s)
      AL928590
      Consensus CDS
      CCDS50701.1
      UniProtKB/Swiss-Prot
      A1L3P2, A2ASA8, B7ZCY2
      Related
      ENSMUSP00000122289.2, ENSMUST00000154021.2
      Conserved Domains (1) summary
      pfam03281
      Location:287514
      Mab-21; Mab-21 protein
    3. NM_001355634.1NP_001342563.1  inositol 1,4,5-trisphosphate receptor-interacting protein-like 1 isoform b precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate internal segment compared to variant 1, that causes a frameshift. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a.
      Source sequence(s)
      AK028913, AL928590
      Consensus CDS
      CCDS89550.1
      UniProtKB/TrEMBL
      A2ASB0
      Related
      ENSMUSP00000118487.2, ENSMUST00000132773.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      126980689..126985377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030252117.2XP_030107977.1  inositol 1,4,5-trisphosphate receptor-interacting protein-like 1 isoform X1