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    LOC8082588 probable polyamine oxidase 2 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8082588, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8082588
    Gene description
    probable polyamine oxidase 2
    Locus tag
    SORBI_3006G261500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8082588 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 6 NC_012875.2 (59630129..59633428, complement)

    Chromosome 6 - NC_012875.2Genomic Context describing neighboring genes Neighboring gene probable adenylate kinase 6, chloroplastic Neighboring gene uncharacterized LOC8070307 Neighboring gene uncharacterized LOC110436400 Neighboring gene uncharacterized LOC8082589 Neighboring gene uncharacterized LOC8155402

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012875.2 Chromosome 6 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polyamine oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in polyamine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable polyamine oxidase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012875.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      59630129..59633428 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002448697.2 → XP_002448742.1  probable polyamine oxidase 2

      See identical proteins and their annotated locations for XP_002448742.1

      UniProtKB/TrEMBL
      A0A921QU80, C5YA47
      Conserved Domains (2) summary
      PLN02268
      Location:24 → 458
      PLN02268; probable polyamine oxidase
      pfam13450
      Location:28 → 95
      NAD_binding_8; NAD(P)-binding Rossmann-like domain
    Nucleotide Protein
    Heading Accession and Version

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