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    LOC110841055 activator of basal transcription 1-like [ Zootermopsis nevadensis ]

    Gene ID: 110841055, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC110841055
    Gene description
    activator of basal transcription 1-like
    Locus tag
    L798_12941
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zootermopsis nevadensis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea; Blattoidea; Termitoidae; Termopsidae; Zootermopsis
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    Genomic context

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    See LOC110841055 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ZooNev1.0 (GCF_000696155.1) Unplaced Scaffold NW_019065820.1 (6548..9818)

    NW_019065820.1Genomic Context describing neighboring genes Neighboring gene protein partner of snf Neighboring gene oligosaccharide transferase delta subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019065820 Unplaced Scaffold Reference ZooNev1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in small-subunit processome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    activator of basal transcription 1-like
    Names
    Activator of basal transcription 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zootermopsis nevadensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZooNev1.0 Primary Assembly

    Genomic

    1. NW_019065820.1 Reference ZooNev1.0 Primary Assembly

      Range
      6548..9818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022086360.1 → XP_021942052.1  activator of basal transcription 1-like isoform X1

      Conserved Domains (1) summary
      cd12263
      Location:28 → 123
      RRM_ABT1_like; RNA recognition motif found in activator of basal transcription 1 (ABT1) and similar proteins

    2. XM_022086361.1 → XP_021942053.1  activator of basal transcription 1-like isoform X2

      UniProtKB/TrEMBL
      A0A067QRK0
      Conserved Domains (1) summary
      cd12263
      Location:28 → 123
      RRM_ABT1_like; RNA recognition motif found in activator of basal transcription 1 (ABT1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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