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    pps protein partner of snf [ Zootermopsis nevadensis ]

    Gene ID: 110841056, updated on 22-May-2024

    Summary

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    Gene symbol
    pps
    Gene description
    protein partner of snf
    Locus tag
    L798_12942
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zootermopsis nevadensis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea; Blattoidea; Termitoidae; Termopsidae; Zootermopsis
    Orthologs
    fruit fly all
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    Genomic context

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    See pps in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current ZooNev1.0 (GCF_000696155.1) Unplaced Scaffold NW_019065820.1 (11443..53479)

    NW_019065820.1Genomic Context describing neighboring genes Neighboring gene activator of basal transcription 1-like Neighboring gene oligosaccharide transferase delta subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019065820 Unplaced Scaffold Reference ZooNev1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    death-inducer obliterator 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zootermopsis nevadensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZooNev1.0 Primary Assembly

    Genomic

    1. NW_019065820.1 Reference ZooNev1.0 Primary Assembly

      Range
      11443..53479
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022086365.1 → XP_021942057.1  death-inducer obliterator 1 isoform X2

      Conserved Domains (9) summary
      cd15552
      Location:987 → 1036
      PHD_PHF3_like; PHD finger found in PHD finger protein 3 (PHF3), and death-inducer obliterator variants Dido1, Dido2, and Dido3
      pfam07500
      Location:1419 → 1528
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07533
      Location:1200 → 1239
      BRK; BRK domain
      pfam07744
      Location:1793 → 1941
      SPOC; SPOC domain
      pfam08648
      Location:1622 → 1765
      DUF1777; Protein of unknown function (DUF1777)
      pfam12855
      Location:1112 → 1143
      Ecl1; Life-span regulatory factor
      cl26267
      Location:902 → 1040
      ING; Inhibitor of growth proteins N-terminal histone-binding
      cl26464
      Location:2401 → 2721
      Atrophin-1; Atrophin-1 family
      cl28087
      Location:1148 → 1360
      FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

    2. XM_022086362.1 → XP_021942054.1  death-inducer obliterator 1 isoform X1

      UniProtKB/TrEMBL
      A0A067QP55
      Conserved Domains (8) summary
      cd15552
      Location:988 → 1037
      PHD_PHF3_like; PHD finger found in PHD finger protein 3 (PHF3), and death-inducer obliterator variants Dido1, Dido2, and Dido3
      pfam07500
      Location:1420 → 1529
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07533
      Location:1201 → 1240
      BRK; BRK domain
      pfam07744
      Location:1794 → 1942
      SPOC; SPOC domain
      pfam08648
      Location:1623 → 1766
      DUF1777; Protein of unknown function (DUF1777)
      cl26267
      Location:903 → 1041
      ING; Inhibitor of growth proteins N-terminal histone-binding
      cl26464
      Location:2402 → 2722
      Atrophin-1; Atrophin-1 family
      cl28087
      Location:1149 → 1361
      FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

    3. XM_022086363.1 → XP_021942055.1  death-inducer obliterator 1 isoform X1

      UniProtKB/TrEMBL
      A0A067QP55
      Conserved Domains (8) summary
      cd15552
      Location:988 → 1037
      PHD_PHF3_like; PHD finger found in PHD finger protein 3 (PHF3), and death-inducer obliterator variants Dido1, Dido2, and Dido3
      pfam07500
      Location:1420 → 1529
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07533
      Location:1201 → 1240
      BRK; BRK domain
      pfam07744
      Location:1794 → 1942
      SPOC; SPOC domain
      pfam08648
      Location:1623 → 1766
      DUF1777; Protein of unknown function (DUF1777)
      cl26267
      Location:903 → 1041
      ING; Inhibitor of growth proteins N-terminal histone-binding
      cl26464
      Location:2402 → 2722
      Atrophin-1; Atrophin-1 family
      cl28087
      Location:1149 → 1361
      FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

    4. XM_022086364.1 → XP_021942056.1  death-inducer obliterator 1 isoform X1

      UniProtKB/TrEMBL
      A0A067QP55
      Conserved Domains (8) summary
      cd15552
      Location:988 → 1037
      PHD_PHF3_like; PHD finger found in PHD finger protein 3 (PHF3), and death-inducer obliterator variants Dido1, Dido2, and Dido3
      pfam07500
      Location:1420 → 1529
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07533
      Location:1201 → 1240
      BRK; BRK domain
      pfam07744
      Location:1794 → 1942
      SPOC; SPOC domain
      pfam08648
      Location:1623 → 1766
      DUF1777; Protein of unknown function (DUF1777)
      cl26267
      Location:903 → 1041
      ING; Inhibitor of growth proteins N-terminal histone-binding
      cl26464
      Location:2402 → 2722
      Atrophin-1; Atrophin-1 family
      cl28087
      Location:1149 → 1361
      FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version

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