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    LOC111459248 E3 ubiquitin protein ligase RIN2-like [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111459248, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111459248
    Gene description
    E3 ubiquitin protein ligase RIN2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111459248 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268538.1 (1121317..1134976, complement)

    NW_019268538.1Genomic Context describing neighboring genes Neighboring gene LRR receptor-like serine/threonine-protein kinase ERL1 Neighboring gene cysteine and histidine-rich domain-containing protein RAR1 Neighboring gene uncharacterized LOC111459250 Neighboring gene glutaredoxin-C13-like Neighboring gene putative mediator of RNA polymerase II transcription subunit 26

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268538 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of plant-type hypersensitive response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin protein ligase RIN2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268538.1 Reference Cmos_1.0

      Range
      1121317..1134976 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023102053.1 → XP_022957821.1  E3 ubiquitin protein ligase RIN2-like

      UniProtKB/TrEMBL
      A0A6J1H0A8
      Conserved Domains (3) summary
      cd14422
      Location:547 → 584
      CUE_RIN3_plant; CUE domain found in plant E3 ubiquitin protein ligases RIN2, RIN3 and similar proteins
      cl17238
      Location:335 → 380
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl26329
      Location:258 → 447
      zf-rbx1; RING-H2 zinc finger domain

    2. XM_023102055.1 → XP_022957823.1  E3 ubiquitin protein ligase RIN2-like

      UniProtKB/TrEMBL
      A0A6J1H0A8
      Conserved Domains (3) summary
      cd14422
      Location:547 → 584
      CUE_RIN3_plant; CUE domain found in plant E3 ubiquitin protein ligases RIN2, RIN3 and similar proteins
      cl17238
      Location:335 → 380
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl26329
      Location:258 → 447
      zf-rbx1; RING-H2 zinc finger domain

    3. XM_023102054.1 → XP_022957822.1  E3 ubiquitin protein ligase RIN2-like

      UniProtKB/TrEMBL
      A0A6J1H0A8
      Conserved Domains (3) summary
      cd14422
      Location:547 → 584
      CUE_RIN3_plant; CUE domain found in plant E3 ubiquitin protein ligases RIN2, RIN3 and similar proteins
      cl17238
      Location:335 → 380
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl26329
      Location:258 → 447
      zf-rbx1; RING-H2 zinc finger domain
    Nucleotide Protein
    Heading Accession and Version

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