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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001024134.2 → NP_001019305.1 E3 ubiquitin-protein ligase TRIM15 isoform 2
See identical proteins and their annotated locations for NP_001019305.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has an additional segment in the 3' CDS, as compared to variant 1, resulting in a reading frame shift. The resulting isoform (2) is slightly shorter and has a different C-terminus, as compared to isoform 1.
- Source sequence(s)
-
CR956641
- Consensus CDS
-
CCDS50102.1
- UniProtKB/TrEMBL
-
Q8R096
- Related
- ENSMUSP00000025329.7, ENSMUST00000025329.13
- Conserved Domains (3) summary
-
- cd00021
Location:76 → 114
- BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
- cl17238
Location:15 → 53
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cl21478
Location:193 → 290
- ATP-synt_B; ATP synthase B/B' CF(0)
-
NM_001177872.1 → NP_001171343.1 E3 ubiquitin-protein ligase TRIM15 isoform 1
See identical proteins and their annotated locations for NP_001171343.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
CR956641
- Consensus CDS
-
CCDS57079.1
- UniProtKB/TrEMBL
-
G3UY57
- Related
- ENSMUSP00000133953.2, ENSMUST00000174195.8
- Conserved Domains (3) summary
-
- cd00021
Location:76 → 114
- BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
- cl17238
Location:15 → 53
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cl21478
Location:193 → 290
- ATP-synt_B; ATP synthase B/B' CF(0)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000083.7 Reference GRCm39 C57BL/6J
- Range
-
37171582..37179066 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036160777.1 → XP_036016670.1 E3 ubiquitin-protein ligase TRIM15 isoform X1
- Conserved Domains (4) summary
-
- COG1196
Location:122 → 269
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- cd00162
Location:15 → 53
- RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
- cl00034
Location:76 → 114
- Bbox_SF; B-box-type zinc finger superfamily
- cl17238
Location:15 → 54
- RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
-
XM_036160778.1 → XP_036016671.1 E3 ubiquitin-protein ligase TRIM15 isoform X2
RNA
-
XR_385361.5 RNA Sequence
-
XR_876527.1 RNA Sequence