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    Tpbpa trophoblast specific protein alpha [ Mus musculus (house mouse) ]

    Gene ID: 21984, updated on 27-Nov-2024

    Summary

    Official Symbol
    Tpbpaprovided by MGI
    Official Full Name
    trophoblast specific protein alphaprovided by MGI
    Primary source
    MGI:MGI:98795
    See related
    Ensembl:ENSMUSG00000033834 AllianceGenome:MGI:98795
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tb1; Tb-1; Tpbp; b2b1247Clo
    Summary
    Acts upstream of or within JNK cascade and cellular response to organic cyclic compound. Predicted to be located in extracellular region. Is expressed in extraembryonic component and placenta. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward placenta adult (RPKM 3122.9) See more
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    Genomic context

    See Tpbpa in Genome Data Viewer
    Location:
    13 B2; 13 32.57 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (61086306..61089750, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (60938492..60941936, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene trophoblast specific protein beta Neighboring gene cytotoxic T lymphocyte-associated protein 2 alpha Neighboring gene predicted gene, 40976 Neighboring gene predicted gene, 40975 Neighboring gene cathepsin J

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    General gene information

    Markers

    Clone Names

    • MGC117542

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    trophoblast-specific protein alpha
    Names
    Mutant line 1247
    clone 4311

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009411.5NP_033437.2  trophoblast-specific protein alpha precursor

      See identical proteins and their annotated locations for NP_033437.2

      Status: VALIDATED

      Source sequence(s)
      AK005454, AK028071
      Consensus CDS
      CCDS36693.1
      UniProtKB/Swiss-Prot
      P13438
      UniProtKB/TrEMBL
      Q9CPR0, Q9D6B1
      Related
      ENSMUSP00000021885.7, ENSMUST00000021885.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      61086306..61089750 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)