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    LOC105695244 E3 ubiquitin-protein ligase AMFR [ Orussus abietinus ]

    Gene ID: 105695244, updated on 1-Oct-2024

    Summary

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    Gene symbol
    LOC105695244
    Gene description
    E3 ubiquitin-protein ligase AMFR
    See related
    EnsemblRapid:LOC105695244
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Orussus abietinus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Orussoidea; Orussidae; Orussus
    Orthologs
    honey bee all
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    Genomic context

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    See LOC105695244 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Oabi_2.0 (GCF_000612105.2) Unplaced Scaffold NW_019396019.1 (554421..575760)
    100 previous assembly Oabi_1.0 (GCF_000612105.1) Unplaced Scaffold NW_012191667.1 (556314..577732)

    NW_019396019.1Genomic Context describing neighboring genes Neighboring gene Molybdenum cofactor synthesis 2B Neighboring gene RNA-binding protein Nova-1-like protein passilla Neighboring gene probable maleylacetoacetate isomerase 2 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Neighboring gene insulinoma-associated protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenomics resolves the timing and pattern of insect evolution. Misof B, et al. Science, 2014 Nov 7. PMID 25378627
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K48-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase AMFR

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Orussus abietinus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oabi_2.0

    Genomic

    1. NW_019396019.1 Reference Oabi_2.0

      Range
      554421..575760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012416615.2 → XP_012272038.1  E3 ubiquitin-protein ligase AMFR

      See identical proteins and their annotated locations for XP_012272038.1

      Related
      XP_012272038.1, XM_012416615.2
      Conserved Domains (3) summary
      COG5243
      Location:81 → 403
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      cd14421
      Location:456 → 496
      CUE_AMFR; CUE domain found in autocrine motility factor receptor (AMFR) and similar proteins
      pfam13639
      Location:346 → 386
      zf-RING_2; Ring finger domain

    2. XM_012416614.2 → XP_012272037.1  E3 ubiquitin-protein ligase AMFR

      See identical proteins and their annotated locations for XP_012272037.1

      Related
      XP_012272037.1, XM_012416614.2
      Conserved Domains (3) summary
      COG5243
      Location:81 → 403
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      cd14421
      Location:456 → 496
      CUE_AMFR; CUE domain found in autocrine motility factor receptor (AMFR) and similar proteins
      pfam13639
      Location:346 → 386
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version

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