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    Hnf4 Hepatocyte nuclear factor 4 [ Orussus abietinus ]

    Gene ID: 105695304, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Hnf4
    Gene description
    Hepatocyte nuclear factor 4
    See related
    EnsemblRapid:LOC105695304
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Orussus abietinus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Orussoidea; Orussidae; Orussus
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See Hnf4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Oabi_2.0 (GCF_000612105.2) Unplaced Scaffold NW_019396019.1 (419683..455463)
    100 previous assembly Oabi_1.0 (GCF_000612105.1) Unplaced Scaffold NW_012191667.1 (421073..456850)

    NW_019396019.1Genomic Context describing neighboring genes Neighboring gene bestrophin-4 Neighboring gene Toll-like receptor 7 Neighboring gene zinc finger protein 665 Neighboring gene DNA replication complex GINS protein PSF3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenomics resolves the timing and pattern of insect evolution. Misof B, et al. Science, 2014 Nov 7. PMID 25378627
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hepatocyte nuclear factor 4-gamma

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Orussus abietinus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oabi_2.0

    Genomic

    1. NW_019396019.1 Reference Oabi_2.0

      Range
      419683..455463
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012416755.2 → XP_012272178.1  hepatocyte nuclear factor 4-gamma isoform X1

      See identical proteins and their annotated locations for XP_012272178.1

      Related
      XP_012272178.1, XM_012416755.2
      Conserved Domains (2) summary
      cd06931
      Location:152 → 388
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:57 → 132
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    2. XM_012416757.2 → XP_012272180.1  hepatocyte nuclear factor 4-gamma isoform X1

      See identical proteins and their annotated locations for XP_012272180.1

      Related
      XP_012272180.1, XM_012416757.2
      Conserved Domains (2) summary
      cd06931
      Location:152 → 388
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:57 → 132
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    3. XM_012416759.2 → XP_012272182.1  hepatocyte nuclear factor 4-gamma isoform X1

      See identical proteins and their annotated locations for XP_012272182.1

      Related
      XP_012272182.1, XM_012416759.2
      Conserved Domains (2) summary
      cd06931
      Location:152 → 388
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:57 → 132
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    4. XM_012416760.2 → XP_012272183.1  hepatocyte nuclear factor 4-gamma isoform X1

      See identical proteins and their annotated locations for XP_012272183.1

      Related
      XP_012272183.1, XM_012416760.2
      Conserved Domains (2) summary
      cd06931
      Location:152 → 388
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:57 → 132
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    5. XM_012416761.2 → XP_012272184.1  hepatocyte nuclear factor 4-gamma isoform X1

      See identical proteins and their annotated locations for XP_012272184.1

      Related
      XP_012272184.1, XM_012416761.2
      Conserved Domains (2) summary
      cd06931
      Location:152 → 388
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:57 → 132
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    6. XM_012416756.2 → XP_012272179.1  hepatocyte nuclear factor 4-gamma isoform X1

      See identical proteins and their annotated locations for XP_012272179.1

      Related
      XP_012272179.1, XM_012416756.2
      Conserved Domains (2) summary
      cd06931
      Location:152 → 388
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:57 → 132
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    7. XM_012416758.2 → XP_012272181.1  hepatocyte nuclear factor 4-gamma isoform X1

      See identical proteins and their annotated locations for XP_012272181.1

      Related
      XP_012272181.1, XM_012416758.2
      Conserved Domains (2) summary
      cd06931
      Location:152 → 388
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:57 → 132
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    8. XM_012416762.2 → XP_012272185.1  hepatocyte nuclear factor 4-gamma isoform X1

      See identical proteins and their annotated locations for XP_012272185.1

      Related
      XP_012272185.1, XM_012416762.2
      Conserved Domains (2) summary
      cd06931
      Location:152 → 388
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:57 → 132
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    9. XM_012416763.1 → XP_012272186.1  hepatocyte nuclear factor 4-gamma isoform X2

      Related
      XP_012272186.1, XM_012416763.1
      Conserved Domains (2) summary
      cd06931
      Location:152 → 382
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:57 → 132
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    10. XM_012416764.2 → XP_012272187.1  hepatocyte nuclear factor 4-gamma isoform X3

      Related
      XP_012272187.1, XM_012416764.2
      Conserved Domains (2) summary
      cd06931
      Location:137 → 373
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:42 → 117
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    11. XM_012416765.2 → XP_012272188.1  hepatocyte nuclear factor 4-gamma isoform X4

      Related
      XP_012272188.1, XM_012416765.2
      Conserved Domains (2) summary
      cd06931
      Location:130 → 366
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:35 → 110
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    Nucleotide Protein
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