U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    NXF1 nuclear RNA export factor 1 [ Trichechus manatus latirostris (Florida manatee) ]

    Gene ID: 101362056, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    NXF1
    Gene description
    nuclear RNA export factor 1
    See related
    EnsemblRapid:ENSTMLG00000019773
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trichechus manatus latirostris (sub-species: latirostris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NXF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444049.1 (8251593..8263982)

    NW_004444049.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 74 Neighboring gene syntaxin 5 Neighboring gene thymosin beta-4 pseudogene Neighboring gene transmembrane protein 223 Neighboring gene transmembrane protein 179B

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_004444049 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear RNA export factor 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TriManLat1.0 Primary Assembly

    Genomic

    1. NW_004444049.1 Reference TriManLat1.0 Primary Assembly

      Range
      8251593..8263982
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004383830.2 → XP_004383887.1  nuclear RNA export factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A2Y9DYQ8
      Related
      ENSTMLP00000027782.1, ENSTMLT00000029819.1
      Conserved Domains (6) summary
      smart00804
      Location:554 → 616
      TAP_C; C-terminal domain of vertebrate Tap protein
      cd00780
      Location:380 → 536
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      sd00035
      Location:222 → 264
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam09162
      Location:114 → 196
      Tap-RNA_bind; Tap, RNA-binding
      pfam12799
      Location:263 → 309
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:263 → 325
      LRR_8; Leucine rich repeat

    2. XM_023738245.1 → XP_023594013.1  nuclear RNA export factor 1 isoform X3

      UniProtKB/TrEMBL
      A0A2Y9RR04
      Conserved Domains (4) summary
      sd00035
      Location:222 → 264
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam09162
      Location:114 → 195
      Tap-RNA_bind; Tap, RNA-binding
      pfam13855
      Location:263 → 325
      LRR_8; Leucine rich repeat
      cl09109
      Location:380 → 499
      NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...

    3. XM_023738244.1 → XP_023594012.1  nuclear RNA export factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A2Y9RHV2
      Conserved Domains (5) summary
      smart00804
      Location:553 → 615
      TAP_C; C-terminal domain of vertebrate Tap protein
      cd00780
      Location:380 → 535
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      sd00035
      Location:222 → 264
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam09162
      Location:114 → 195
      Tap-RNA_bind; Tap, RNA-binding
      pfam13855
      Location:263 → 325
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.