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    LOC9645591 phenylalanine--tRNA ligase beta subunit, cytoplasmic [ Selaginella moellendorffii ]

    Gene ID: 9645591, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC9645591
    Gene description
    phenylalanine--tRNA ligase beta subunit, cytoplasmic
    Locus tag
    SELMODRAFT_175180
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Selaginella moellendorffii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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    Genomic context

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    See LOC9645591 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314290.1 (147213..150093)

    NW_003314290.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g02750 Neighboring gene uncharacterized LOC9645986 Neighboring gene 16.9 kDa class I heat shock protein 1 Neighboring gene auxin transporter-like protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003314290 Unplaced Scaffold Reference v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phenylalanine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phenylalanyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of phenylalanine-tRNA ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phenylalanine--tRNA ligase beta subunit, cytoplasmic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0

    Genomic

    1. NW_003314290.1 Reference v1.0

      Range
      147213..150093
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024681084.1 → XP_024536852.1  phenylalanine--tRNA ligase beta subunit, cytoplasmic isoform X1

      Conserved Domains (1) summary
      PLN02265
      Location:1 → 604
      PLN02265; probable phenylalanyl-tRNA synthetase beta chain

    2. XM_002975794.2 → XP_002975840.1  phenylalanine--tRNA ligase beta subunit, cytoplasmic isoform X2

      UniProtKB/TrEMBL
      D8RYL6
      Conserved Domains (4) summary
      smart00873
      Location:120 → 281
      B3_4; B3/4 domain
      PLN02265
      Location:1 → 586
      PLN02265; probable phenylalanyl-tRNA synthetase beta chain
      cd00769
      Location:393 → 585
      PheRS_beta_core; Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an ...
      pfam03484
      Location:312 → 375
      B5; tRNA synthetase B5 domain
    Nucleotide Protein
    Heading Accession and Version

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