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    LOC112560644 transcription initiation factor TFIID subunit 1-like [ Pomacea canaliculata ]

    Gene ID: 112560644, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC112560644
    Gene description
    transcription initiation factor TFIID subunit 1-like
    See related
    EnsemblRapid:LOC112560644
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pomacea canaliculata
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Caenogastropoda; Architaenioglossa; Ampullarioidea; Ampullariidae; Pomacea
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    Genomic context

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    See LOC112560644 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    41
    Annotation release Status Assembly LG Location
    100 current ASM307304v1 (GCF_003073045.1) LG3 NC_037592.1 (21399367..21424964, complement)

    Linkage Group LG3 - NC_037592.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112559560 Neighboring gene transcription initiation factor TFIID subunit 1-like Neighboring gene RING finger protein 150-like Neighboring gene protocadherin Fat 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037592.1 Chromosome LG3 Reference ASM307304v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pomacea canaliculata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM307304v1 Primary Assembly

    Genomic

    1. NC_037592.1 Reference ASM307304v1 Primary Assembly

      Range
      21399367..21424964 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025232604.1 → XP_025088389.1  LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-like

      UniProtKB/TrEMBL
      A0A2T7PLE5
      Related
      XP_025088389.1, XM_025232604.1
      Conserved Domains (5) summary
      cd05511
      Location:1428 → 1539
      Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
      pfam09247
      Location:37 → 84
      TBP-binding; TATA box-binding protein binding
      pfam12157
      Location:614 → 1075
      DUF3591; Protein of unknown function (DUF3591)
      pfam15288
      Location:1308 → 1345
      zf-CCHC_6; Zinc knuckle
      cl02556
      Location:1550 → 1660
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    Nucleotide Protein
    Heading Accession and Version

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