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    Acaca acetyl-Coenzyme A carboxylase alpha [ Mus musculus (house mouse) ]

    Gene ID: 107476, updated on 27-Nov-2024

    Summary

    Official Symbol
    Acacaprovided by MGI
    Official Full Name
    acetyl-Coenzyme A carboxylase alphaprovided by MGI
    Primary source
    MGI:MGI:108451
    See related
    Ensembl:ENSMUSG00000020532 AllianceGenome:MGI:108451
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Acac; Acc1; Gm738; A530025K05Rik
    Summary
    Enables acetyl-CoA carboxylase activity. Involved in acetyl-CoA metabolic process; fatty acid biosynthetic process; and protein homotetramerization. Acts upstream of or within several processes, including cellular response to prostaglandin E stimulus; lipid homeostasis; and tissue homeostasis. Located in cytosol. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Orthologous to human ACACA (acetyl-CoA carboxylase alpha). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in mammary gland adult (RPKM 81.6), subcutaneous fat pad adult (RPKM 79.2) and 17 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Acaca in Genome Data Viewer
    Location:
    11 C; 11 51.29 cM
    Exon count:
    60
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (84020461..84292477)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (84129635..84401651)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E11769 Neighboring gene synergin, gamma Neighboring gene STARR-positive B cell enhancer mm9_chr11:83845520-83845821 Neighboring gene STARR-seq mESC enhancer starr_30212 Neighboring gene dual specificity phosphatase 14 Neighboring gene transcriptional adaptor 2A Neighboring gene predicted gene 11437 Neighboring gene 60S ribosomal protein L35 pseudogene Neighboring gene STARR-seq mESC enhancer starr_30214 Neighboring gene STARR-positive B cell enhancer mm9_chr11:84077985-84078286 Neighboring gene STARR-seq mESC enhancer starr_30216 Neighboring gene STARR-seq mESC enhancer starr_30218 Neighboring gene STARR-seq mESC enhancer starr_30219 Neighboring gene apoptosis antagonizing transcription factor Neighboring gene STARR-seq mESC enhancer starr_30220 Neighboring gene LIM homeobox protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Gene trapped (1) 
    • Targeted (8)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables acetyl-CoA carboxylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables acetyl-CoA carboxylase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables acetyl-CoA carboxylase activity IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    enables acetyl-CoA carboxylase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables acetyl-CoA carboxylase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables biotin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables kinase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in actin cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytosol IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in fibrillar center IEA
    Inferred from Electronic Annotation
    more info
     
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    acetyl-CoA carboxylase 1
    Names
    ACC-alpha
    acetyl-CoA carboxylase 265
    NP_579938.2
    XP_006532016.1
    XP_006532017.1
    XP_006532018.1
    XP_006532019.1
    XP_011246968.2
    XP_011246969.1
    XP_030101321.1
    XP_030101322.1
    XP_030101323.1
    XP_036012108.1
    XP_036012109.1
    XP_036012110.1
    XP_036012111.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133360.3NP_579938.2  acetyl-CoA carboxylase 1

      See identical proteins and their annotated locations for NP_579938.2

      Status: VALIDATED

      Source sequence(s)
      AL596252, AL596447
      Consensus CDS
      CCDS25185.1
      UniProtKB/Swiss-Prot
      A2A6H4, Q5SWU6, Q5SWU7, Q5SWU8, Q5SWU9, Q6JIZ1, Q6PHL9, Q705X8, Q705X9, Q91VC8, Q925C4, Q925C5
      Conserved Domains (5) summary
      COG0439
      Location:117619
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:670817
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:752817
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:16682216
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:8191568
      ACC_central; Acetyl-CoA carboxylase, central region

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      84020461..84292477
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011248667.2XP_011246969.1  acetyl-CoA carboxylase 1 isoform X4

      See identical proteins and their annotated locations for XP_011246969.1

      UniProtKB/Swiss-Prot
      A2A6H4, Q5SWU6, Q5SWU7, Q5SWU8, Q5SWU9, Q6JIZ1, Q6PHL9, Q705X8, Q705X9, Q91VC8, Q925C4, Q925C5
      Conserved Domains (5) summary
      COG0439
      Location:117619
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:670817
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:752817
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:16682216
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:8191568
      ACC_central; Acetyl-CoA carboxylase, central region
    2. XM_030245463.1XP_030101323.1  acetyl-CoA carboxylase 1 isoform X5

      Conserved Domains (5) summary
      COG0439
      Location:1450
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:501648
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:583648
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:14992047
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:6501399
      ACC_central; Acetyl-CoA carboxylase, central region
    3. XM_006531953.3XP_006532016.1  acetyl-CoA carboxylase 1 isoform X3

      UniProtKB/Swiss-Prot
      Q5SWU9
      Conserved Domains (5) summary
      COG0439
      Location:155657
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:708855
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:791855
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:17062254
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:8571606
      ACC_central; Acetyl-CoA carboxylase, central region
    4. XM_036156216.1XP_036012109.1  acetyl-CoA carboxylase 1 isoform X4

      UniProtKB/Swiss-Prot
      A2A6H4, Q5SWU6, Q5SWU7, Q5SWU8, Q5SWU9, Q6JIZ1, Q6PHL9, Q705X8, Q705X9, Q91VC8, Q925C4, Q925C5
      Conserved Domains (5) summary
      COG0439
      Location:117619
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:670817
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:752817
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:16682216
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:8191568
      ACC_central; Acetyl-CoA carboxylase, central region
    5. XM_036156215.1XP_036012108.1  acetyl-CoA carboxylase 1 isoform X4

      UniProtKB/Swiss-Prot
      A2A6H4, Q5SWU6, Q5SWU7, Q5SWU8, Q5SWU9, Q6JIZ1, Q6PHL9, Q705X8, Q705X9, Q91VC8, Q925C4, Q925C5
      Conserved Domains (5) summary
      COG0439
      Location:117619
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:670817
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:752817
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:16682216
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:8191568
      ACC_central; Acetyl-CoA carboxylase, central region
    6. XM_006531954.3XP_006532017.1  acetyl-CoA carboxylase 1 isoform X4

      See identical proteins and their annotated locations for XP_006532017.1

      UniProtKB/Swiss-Prot
      A2A6H4, Q5SWU6, Q5SWU7, Q5SWU8, Q5SWU9, Q6JIZ1, Q6PHL9, Q705X8, Q705X9, Q91VC8, Q925C4, Q925C5
      Related
      ENSMUSP00000099490.2, ENSMUST00000103201.8
      Conserved Domains (5) summary
      COG0439
      Location:117619
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:670817
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:752817
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:16682216
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:8191568
      ACC_central; Acetyl-CoA carboxylase, central region
    7. XM_006531956.3XP_006532019.1  acetyl-CoA carboxylase 1 isoform X4

      See identical proteins and their annotated locations for XP_006532019.1

      UniProtKB/Swiss-Prot
      A2A6H4, Q5SWU6, Q5SWU7, Q5SWU8, Q5SWU9, Q6JIZ1, Q6PHL9, Q705X8, Q705X9, Q91VC8, Q925C4, Q925C5
      Related
      ENSMUSP00000020843.7, ENSMUST00000020843.13
      Conserved Domains (5) summary
      COG0439
      Location:117619
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:670817
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:752817
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:16682216
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:8191568
      ACC_central; Acetyl-CoA carboxylase, central region
    8. XM_036156217.1XP_036012110.1  acetyl-CoA carboxylase 1 isoform X5

      Conserved Domains (5) summary
      COG0439
      Location:1450
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:501648
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:583648
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:14992047
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:6501399
      ACC_central; Acetyl-CoA carboxylase, central region
    9. XM_030245461.2XP_030101321.1  acetyl-CoA carboxylase 1 isoform X1

      Conserved Domains (5) summary
      COG0439
      Location:195697
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:748895
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:831895
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:17462294
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:8971646
      ACC_central; Acetyl-CoA carboxylase, central region
    10. XM_011248666.3XP_011246968.2  acetyl-CoA carboxylase 1 isoform X2

      Conserved Domains (5) summary
      COG0439
      Location:195697
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:748895
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:831895
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:17382286
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:8971638
      ACC_central; Acetyl-CoA carboxylase, central region
    11. XM_006531955.3XP_006532018.1  acetyl-CoA carboxylase 1 isoform X4

      See identical proteins and their annotated locations for XP_006532018.1

      UniProtKB/Swiss-Prot
      A2A6H4, Q5SWU6, Q5SWU7, Q5SWU8, Q5SWU9, Q6JIZ1, Q6PHL9, Q705X8, Q705X9, Q91VC8, Q925C4, Q925C5
      Conserved Domains (5) summary
      COG0439
      Location:117619
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:670817
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:752817
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:16682216
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:8191568
      ACC_central; Acetyl-CoA carboxylase, central region
    12. XM_036156218.1XP_036012111.1  acetyl-CoA carboxylase 1 isoform X5

      Conserved Domains (5) summary
      COG0439
      Location:1450
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:501648
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:583648
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:14992047
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:6501399
      ACC_central; Acetyl-CoA carboxylase, central region
    13. XM_030245462.2XP_030101322.1  acetyl-CoA carboxylase 1 isoform X4

      UniProtKB/Swiss-Prot
      A2A6H4, Q5SWU6, Q5SWU7, Q5SWU8, Q5SWU9, Q6JIZ1, Q6PHL9, Q705X8, Q705X9, Q91VC8, Q925C4, Q925C5
      Conserved Domains (5) summary
      COG0439
      Location:117619
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:670817
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00364
      Location:752817
      Biotin_lipoyl; Biotin-requiring enzyme
      pfam01039
      Location:16682216
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:8191568
      ACC_central; Acetyl-CoA carboxylase, central region