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    LINJ_24_2150 transketolase [ Leishmania infantum JPCM5 ]

    Gene ID: 5069436, updated on 30-Oct-2024

    Summary

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    Gene symbol
    LINJ_24_2150
    Gene description
    transketolase
    Locus tag
    LINJ_24_2150
    Gene type
    protein coding
    RNA name
    transketolase
    RefSeq status
    PROVISIONAL
    Organism
    Leishmania infantum JPCM5 (strain: JPCM5)
    Lineage
    Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania
    Orthologs
    Leishmania major all
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    Genomic context

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    See LINJ_24_2150 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    1
    Sequence:
    Chromosome: 24; NC_009408.2 (784613..786628, complement)

    Chromosome 24 - NC_009408.2Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene putative 60S ribosomal protein L26 Neighboring gene putative 40S ribosomal protein S8 Neighboring gene putative 40S ribosomal protein S8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009408.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Peacock CS, et al. Nat Genet, 2007 Jul. PMID 17572675, Free PMC Article
    2. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transketolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pentose-phosphate shunt IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    transketolase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009408.2 Reference assembly

      Range
      784613..786628 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001465969.1 → XP_001466006.1  transketolase [Leishmania infantum JPCM5]

      See identical proteins and their annotated locations for XP_001466006.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2K4YVK9, A0A381MIX0, A0A6L0XEN8, A4I115
      Conserved Domains (1) summary
      PTZ00089
      Location:1 → 656
      PTZ00089; transketolase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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