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    Cpsf7 cleavage and polyadenylation specific factor 7 [ Urocitellus parryii (Arctic ground squirrel) ]

    Gene ID: 113195856, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Cpsf7
    Gene description
    cleavage and polyadenylation specific factor 7
    See related
    Ensembl:ENSUPAG00010004406
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Urocitellus parryii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
    Orthologs
    human mouse all
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    Genomic context

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    See Cpsf7 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540254.1 (545524..568428, complement)

    NW_020540254.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 138 Neighboring gene transmembrane protein 216 Neighboring gene succinate dehydrogenase complex assembly factor 2 Neighboring gene stabilizer of axonemal microtubules 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020540254 Unplaced Scaffold Reference ASM342692v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA alternative polyadenylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleavage and polyadenylation specificity factor subunit 7

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM342692v1

    Genomic

    1. NW_020540254.1 Reference ASM342692v1

      Range
      545524..568428 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026407536.1 → XP_026263321.1  cleavage and polyadenylation specificity factor subunit 7 isoform X4

      Conserved Domains (1) summary
      cd12644
      Location:81 → 170
      RRM_CFIm59; RNA recognition motif of pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar proteins

    2. XM_026407534.1 → XP_026263319.1  cleavage and polyadenylation specificity factor subunit 7 isoform X2

      UniProtKB/TrEMBL
      A0A8D2H1D9
      Related
      ENSUPAP00010005454.1, ENSUPAT00010006241.1
      Conserved Domains (2) summary
      COG0724
      Location:50 → 231
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12644
      Location:81 → 170
      RRM_CFIm59; RNA recognition motif of pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar proteins

    3. XM_026407535.1 → XP_026263320.1  cleavage and polyadenylation specificity factor subunit 7 isoform X3

      Conserved Domains (1) summary
      cd12644
      Location:81 → 170
      RRM_CFIm59; RNA recognition motif of pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar proteins

    4. XM_026407533.1 → XP_026263318.1  cleavage and polyadenylation specificity factor subunit 7 isoform X1

      Conserved Domains (2) summary
      COG0724
      Location:50 → 231
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12644
      Location:81 → 170
      RRM_CFIm59; RNA recognition motif of pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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