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    Gm10406 predicted gene 10406 [ Mus musculus (house mouse) ]

    Gene ID: 100038847, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gm10406provided by MGI
    Official Full Name
    predicted gene 10406provided by MGI
    Primary source
    MGI:MGI:3711272
    See related
    Ensembl:ENSMUSG00000093985 AllianceGenome:MGI:3711272
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in CNS E18 (RPKM 3.0), whole brain E14.5 (RPKM 1.8) and 12 other tissues See more
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    Genomic context

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    See Gm10406 in Genome Data Viewer
    Location:
    14 A2; 14 4.16 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (15441191..15463658)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (7006115..7028582, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31035 Neighboring gene predicted gene 3696 Neighboring gene predicted gene 3685 Neighboring gene STARR-seq mESC enhancer starr_35828 Neighboring gene predicted gene, 53833 Neighboring gene predicted gene 3667

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    alpha7-takusan
    Names
    alpha10-takusan
    alpha8-takusan
    alpha9-takusan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164727.1 → NP_001158199.1  alpha7-takusan

      See identical proteins and their annotated locations for NP_001158199.1

      Status: VALIDATED

      Source sequence(s)
      AC164618
      Consensus CDS
      CCDS49396.1
      UniProtKB/TrEMBL
      A6NAS4, A6NAS5, Q7TMK7
      Related
      ENSMUSP00000130661.3, ENSMUST00000170738.3
      Conserved Domains (1) summary
      pfam04822
      Location:50 → 125
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      15441191..15463658
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017315704.3 → XP_017171193.1  alpha7-takusan isoform X6

    2. XM_017315705.2 → XP_017171194.1  alpha7-takusan isoform X7

    3. XM_017315703.2 → XP_017171192.1  alpha7-takusan isoform X4

    4. XM_030247547.1 → XP_030103407.1  alpha7-takusan isoform X5

    5. XM_017315706.3 → XP_017171195.1  alpha7-takusan isoform X8

    6. XM_036158296.1 → XP_036014189.1  alpha7-takusan isoform X2

    7. XM_017315702.2 → XP_017171191.1  alpha7-takusan isoform X3

    8. XM_011244721.2 → XP_011243023.1  alpha7-takusan isoform X9

      UniProtKB/TrEMBL
      A0AA74KSW7
      Conserved Domains (1) summary
      pfam04822
      Location:107 → 187
      Takusan

    9. XM_011244720.1 → XP_011243022.1  alpha7-takusan isoform X1

      UniProtKB/TrEMBL
      A0AA74KT48, A0AA74KUR0
      Conserved Domains (1) summary
      pfam04822
      Location:48 → 128
      Takusan
    Nucleotide Protein Strain
    Heading Accession and Version

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