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    Msmp microseminoprotein, prostate associated [ Mus musculus (house mouse) ]

    Gene ID: 100039672, updated on 27-Nov-2024

    Summary

    Official Symbol
    Msmpprovided by MGI
    Official Full Name
    microseminoprotein, prostate associatedprovided by MGI
    Primary source
    MGI:MGI:3652339
    See related
    Ensembl:ENSMUSG00000078719 AllianceGenome:MGI:3652339
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Psmp
    Summary
    Predicted to enable CCR2 chemokine receptor binding activity. Predicted to be involved in lymphocyte chemotaxis and monocyte chemotaxis. Predicted to be active in cytoplasm and extracellular space. Is expressed in femur; humerus; radius; tibia; and ulna. Orthologous to human MSMP (microseminoprotein, prostate associated). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in ovary adult (RPKM 29.8), thymus adult (RPKM 27.2) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Msmp in Genome Data Viewer
    Location:
    4 A5; 4 23.05 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (43583216..43584494, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (43583216..43584494, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene talin 1 Neighboring gene STARR-seq mESC enhancer starr_10056 Neighboring gene cAMP responsive element binding protein 3 Neighboring gene glucosidase beta 2 Neighboring gene RAB6A GEF compex partner 1 Neighboring gene STARR-seq mESC enhancer starr_10057 Neighboring gene predicted gene 12472 Neighboring gene predicted gene, 42279

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables CCR2 chemokine receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables CCR2 chemokine receptor binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables cytokine activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in lymphocyte chemotaxis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in lymphocyte chemotaxis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in monocyte chemotaxis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in monocyte chemotaxis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular space ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    prostate-associated microseminoprotein
    Names
    PC3-secreted microprotein homolog
    Vmicroseminoprotein, prostate associated

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001099314.1NP_001092784.1  prostate-associated microseminoprotein precursor

      See identical proteins and their annotated locations for NP_001092784.1

      Status: VALIDATED

      Source sequence(s)
      AL732626
      Consensus CDS
      CCDS51167.1
      UniProtKB/Swiss-Prot
      B1AWI6
      Related
      ENSMUSP00000103516.3, ENSMUST00000107884.3
      Conserved Domains (1) summary
      pfam05825
      Location:55114
      PSP94; Beta-microseminoprotein (PSP-94)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      43583216..43584494 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)