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    ILDR1 immunoglobulin like domain containing receptor 1 [ Homo sapiens (human) ]

    Gene ID: 286676, updated on 27-Nov-2024

    Summary

    Official Symbol
    ILDR1provided by HGNC
    Official Full Name
    immunoglobulin like domain containing receptor 1provided by HGNC
    Primary source
    HGNC:HGNC:28741
    See related
    Ensembl:ENSG00000145103 MIM:609739; AllianceGenome:HGNC:28741
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DFNB42; ILDR1beta; ILDR1alpha; ILDR1alpha'
    Summary
    This gene encodes a protein that contains an immunoglobulin-like domain. The encoded protein may function as a multimeric receptor at the cell surface. The expression of this gene may be a diagnostic marker for cancer progression. Alternatively spliced transcript variants encoding multiple protein isoforms have been observed for this gene. [provided by RefSeq, Dec 2010]
    Expression
    Broad expression in colon (RPKM 3.8), prostate (RPKM 3.2) and 17 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See ILDR1 in Genome Data Viewer
    Location:
    3q13.33
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (121987323..122061655, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (124707284..124781644, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (121706170..121741094, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ELL associated factor 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:121611674-121612207 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:121612208-121612740 Neighboring gene solute carrier family 15 member 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:121657363-121657943 Neighboring gene uncharacterized LOC101927010 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:121711615-121712116 Neighboring gene Sharpr-MPRA regulatory region 6303 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20351 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20352 Neighboring gene NANOG hESC enhancer GRCh37_chr3:121724759-121725260 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20353 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20354 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14638 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20357 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20355 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20356 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20360 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20361 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20364 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14639 Neighboring gene CD86 molecule Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20365 Neighboring gene calcium sensing receptor Neighboring gene ReSE screen-validated silencer GRCh37_chr3:121983934-121984035 Neighboring gene NANOG hESC enhancer GRCh37_chr3:122026434-122026982 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 23

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Associated conditions

    Description Tests
    Autosomal recessive nonsyndromic hearing loss 42
    MedGen: C1864818 OMIM: 609646 GeneReviews: Not available
    Compare labs

    EBI GWAS Catalog

    Description
    Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
    EBI GWAS Catalog

    HIV-1 interactions

    Replication interactions

    Interaction Pubs
    Knockdown of immunoglobulin-like domain containing receptor 1 (ILDR1) by siRNA inhibits HIV-1 replication in HeLa P4/R5 cells PubMed

    Go to the HIV-1, Human Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC50831

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables high-density lipoprotein particle receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables high-density lipoprotein particle receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to leukemia inhibitory factor IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in epithelial structure maintenance ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in establishment of localization in cell IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in peptide hormone secretion IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within positive regulation of peptide hormone secretion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in protein localization to tricellular tight junction ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of RNA splicing ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in response to fatty acid ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in tricellular tight junction assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of protein-containing complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in tight junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in tricellular tight junction ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    immunoglobulin-like domain-containing receptor 1
    Names
    angulin-2
    immunoglobulin-like domain-containing receptor 1 alpha
    immunoglobulin-like domain-containing receptor 1 beta

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_031870.2 RefSeqGene

      Range
      43308..78232
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_1377

    mRNA and Protein(s)

    1. NM_001199799.2NP_001186728.1  immunoglobulin-like domain-containing receptor 1 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001186728.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AK129974, AY672837, BC044240
      Consensus CDS
      CCDS56271.1
      UniProtKB/Swiss-Prot
      Q6ZP61, Q7Z578, Q86SU0
      Related
      ENSP00000345667.5, ENST00000344209.10
      Conserved Domains (1) summary
      cl11960
      Location:39166
      Ig; Immunoglobulin domain
    2. NM_001199800.2NP_001186729.1  immunoglobulin-like domain-containing receptor 1 isoform 3 precursor

      See identical proteins and their annotated locations for NP_001186729.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks multiple exons in the coding region but maintains the reading frame, compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
      Source sequence(s)
      AC080098, AK129974, AY672839, BC044240
      Consensus CDS
      CCDS56270.1
      UniProtKB/Swiss-Prot
      Q86SU0
      Related
      ENSP00000377251.1, ENST00000393631.5
    3. NM_175924.4NP_787120.1  immunoglobulin-like domain-containing receptor 1 isoform 2 precursor

      See identical proteins and their annotated locations for NP_787120.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an exon in the coding region but maintains the reading frame, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AC080098, AK129974, BC044240
      Consensus CDS
      CCDS3008.1
      UniProtKB/Swiss-Prot
      Q86SU0
      Related
      ENSP00000273691.3, ENST00000273691.7
      Conserved Domains (1) summary
      cl11960
      Location:39166
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      121987323..122061655 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047448044.1XP_047304000.1  immunoglobulin-like domain-containing receptor 1 isoform X4

    2. XM_047448043.1XP_047303999.1  immunoglobulin-like domain-containing receptor 1 isoform X3

    3. XM_011512738.3XP_011511040.1  immunoglobulin-like domain-containing receptor 1 isoform X1

      Conserved Domains (1) summary
      cl11960
      Location:39166
      Ig; Immunoglobulin domain
    4. XM_005247389.5XP_005247446.1  immunoglobulin-like domain-containing receptor 1 isoform X2

      See identical proteins and their annotated locations for XP_005247446.1

      UniProtKB/Swiss-Prot
      Q86SU0
      Conserved Domains (1) summary
      PHA03307
      Location:307511
      PHA03307; transcriptional regulator ICP4; Provisional

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      124707284..124781644 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054346360.1XP_054202335.1  immunoglobulin-like domain-containing receptor 1 isoform X4

    2. XM_054346359.1XP_054202334.1  immunoglobulin-like domain-containing receptor 1 isoform X3

    3. XM_054346357.1XP_054202332.1  immunoglobulin-like domain-containing receptor 1 isoform X1

    4. XM_054346358.1XP_054202333.1  immunoglobulin-like domain-containing receptor 1 isoform X2