U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Leap2 liver-expressed antimicrobial peptide 2 [ Mus musculus (house mouse) ]

    Gene ID: 259301, updated on 9-Dec-2024

    Summary

    Official Symbol
    Leap2provided by MGI
    Official Full Name
    liver-expressed antimicrobial peptide 2provided by MGI
    Primary source
    MGI:MGI:2672795
    See related
    Ensembl:ENSMUSG00000036216 AllianceGenome:MGI:2672795
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    leap-2
    Summary
    Predicted to be involved in antimicrobial humoral immune response mediated by antimicrobial peptide and defense response to fungus. Predicted to be located in extracellular region. Orthologous to human LEAP2 (liver enriched antimicrobial peptide 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in duodenum adult (RPKM 48.2), liver adult (RPKM 44.4) and 5 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Leap2 in Genome Data Viewer
    Location:
    11 B1.3; 11 31.94 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (53313008..53313963, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (53422181..53423136, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene AF4/FMR2 family, member 4 Neighboring gene predicted gene, 25930 Neighboring gene microRNA 6920 Neighboring gene STARR-positive B cell enhancer ABC_E76 Neighboring gene ubiquinol-cytochrome c reductase, complex III subunit VII Neighboring gene growth differentiation factor 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (8)  1 citation
    • Targeted (1) 

    Pathways from PubChem

    General protein information

    Preferred Names
    liver-expressed antimicrobial peptide 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153069.3NP_694709.1  liver-expressed antimicrobial peptide 2 precursor

      See identical proteins and their annotated locations for NP_694709.1

      Status: VALIDATED

      Source sequence(s)
      AA571276, W82161
      Consensus CDS
      CCDS36150.1
      UniProtKB/Swiss-Prot
      Q5EBH6, Q91V13
      Related
      ENSMUSP00000044166.6, ENSMUST00000036045.6
      Conserved Domains (1) summary
      pfam07359
      Location:176
      LEAP-2; Liver-expressed antimicrobial peptide 2 precursor (LEAP-2)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      53313008..53313963 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)