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    SH3YL1 SH3 and SYLF domain containing 1 [ Bos indicus x Bos taurus (hybrid cattle) ]

    Gene ID: 113897765, updated on 15-Mar-2024

    Summary

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    Gene symbol
    SH3YL1
    Gene description
    SH3 and SYLF domain containing 1
    See related
    Ensembl:ENSBIXG00005023611
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos indicus x Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SH3YL1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current UOA_Brahman_1 (GCF_003369695.1) 8 NC_040083.1 (112791919..112853431)

    Chromosome 8 - NC_040083.1Genomic Context describing neighboring genes Neighboring gene ALK and LTK ligand 2 Neighboring gene acid phosphatase 1 Neighboring gene uncharacterized LOC113897769 Neighboring gene family with sequence similarity 110 member C Neighboring gene histone-lysine N-methyltransferase PRDM9-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_040083.1 Chromosome 8 Reference UOA_Brahman_1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ruffle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SH3 domain-containing YSC84-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bos indicus x Bos taurus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UOA_Brahman_1

    Genomic

    1. NC_040083.1 Reference UOA_Brahman_1

      Range
      112791919..112853431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027550748.1 → XP_027406549.1  SH3 domain-containing YSC84-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A4W2GRE0

    2. XM_027550749.1 → XP_027406550.1  SH3 domain-containing YSC84-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A4W2GPH4, A0A4W2GRE0
      Related
      ENSBIXP00005040784.1, ENSBIXT00005050349.1
      Conserved Domains (2) summary
      cd11525
      Location:11 → 209
      SYLF_SH3YL1_like; The SYLF domain (also called DUF500), a novel lipid-binding module, of SH3 domain containing Ysc84-like 1 (SH3YL1) and similar proteins
      cd11841
      Location:286 → 339
      SH3_SH3YL1_like; Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

    3. XM_027550750.1 → XP_027406551.1  SH3 domain-containing YSC84-like protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A4W2GRE0

    4. XM_027550746.1 → XP_027406547.1  SH3 domain-containing YSC84-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4W2GRE0

    5. XM_027550747.1 → XP_027406548.1  SH3 domain-containing YSC84-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A4W2GRE0
    Nucleotide Protein
    Heading Accession and Version

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