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    SOX5 SRY-box transcription factor 5 [ Tupaia chinensis (Chinese tree shrew) ]

    Gene ID: 102469054, updated on 10-Mar-2024

    Summary

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    Gene symbol
    SOX5
    Gene description
    SRY-box transcription factor 5
    Locus tag
    TREES_T100009639
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tupaia chinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
    Orthologs
    human mouse all
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    Genomic context

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    See SOX5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159458.1 (6964634..7982966)

    NW_006159458.1Genomic Context describing neighboring genes Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member B-like Neighboring gene branched chain amino acid transaminase 1 Neighboring gene small nucleolar RNA SNORA61 Neighboring gene vacuolar protein sorting-associated protein 72 homolog pseudogene Neighboring gene uncharacterized LOC102471320 Neighboring gene U6 spliceosomal RNA Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member A-like Neighboring gene uncharacterized LOC102470895 Neighboring gene uncharacterized LOC102468775 Neighboring gene voltage-dependent anion-selective channel protein 1 pseudogene Neighboring gene ATP synthase F(0) complex subunit C3, mitochondrial pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006159458 Unplaced Scaffold Reference TupChi_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of chondrocyte differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SOX-5
    Names
    SRY-box 5
    Transcription factor SOX-5

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TupChi_1.0

    Genomic

    1. NW_006159458.1 Reference TupChi_1.0

      Range
      6964634..7982966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027771080.1 → XP_027626881.1  transcription factor SOX-5 isoform X2

    2. XM_027771084.1 → XP_027626885.1  transcription factor SOX-5 isoform X2

    3. XM_027771082.1 → XP_027626883.1  transcription factor SOX-5 isoform X2

    4. XM_027771093.1 → XP_027626894.1  transcription factor SOX-5 isoform X2

    5. XM_027771092.1 → XP_027626893.1  transcription factor SOX-5 isoform X2

    6. XM_027771094.1 → XP_027626895.1  transcription factor SOX-5 isoform X4

    7. XM_014587346.2 → XP_014442832.1  transcription factor SOX-5 isoform X5

      Conserved Domains (1) summary
      cd01388
      Location:471 → 542
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    8. XM_014587330.2 → XP_014442816.1  transcription factor SOX-5 isoform X1

      Conserved Domains (1) summary
      cd01388
      Location:555 → 626
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    9. XM_014587342.2 → XP_014442828.1  transcription factor SOX-5 isoform X3

      Conserved Domains (1) summary
      cd01388
      Location:520 → 591
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    10. XM_027771087.1 → XP_027626888.1  transcription factor SOX-5 isoform X2

    11. XM_006140307.3 → XP_006140369.1  transcription factor SOX-5 isoform X6

      Conserved Domains (1) summary
      cd01388
      Location:295 → 366
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    12. XM_006140308.3 → XP_006140370.1  transcription factor SOX-5 isoform X7

      Conserved Domains (1) summary
      cd01388
      Location:261 → 332
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    Nucleotide Protein
    Heading Accession and Version

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