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    LOC114151637 caspase-8-like [ Xiphophorus couchianus (Monterrey platyfish) ]

    Gene ID: 114151637, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114151637
    Gene description
    caspase-8-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus couchianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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    Genomic context

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    See LOC114151637 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current X_couchianus-1.0 (GCF_001444195.1) 9 NC_040236.1 (24215754..24220056)

    Chromosome 9 - NC_040236.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114151415 Neighboring gene uncharacterized LOC114150486 Neighboring gene kynurenine aminotransferase 3 Neighboring gene leucine rich repeat containing 8 VRAC subunit C

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_040236.1 Chromosome 9 Reference X_couchianus-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of extrinsic apoptotic signaling pathway via death domain receptors IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caspase-8-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_couchianus-1.0 Primary Assembly

    Genomic

    1. NC_040236.1 Reference X_couchianus-1.0 Primary Assembly

      Range
      24215754..24220056
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028028980.1 → XP_027884781.1  caspase-8-like isoform X2

      Conserved Domains (1) summary
      cl00042
      Location:3 → 218
      CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide ...

    2. XM_028028981.1 → XP_027884782.1  caspase-8-like isoform X2

      Conserved Domains (1) summary
      cl00042
      Location:3 → 218
      CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide ...

    3. XM_028028979.1 → XP_027884780.1  caspase-8-like isoform X1

      Conserved Domains (1) summary
      cd00032
      Location:30 → 267
      CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide ...
    Nucleotide Protein
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