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    B3galt2 Beta-1,3-galactosyltransferase 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 686081, updated on 9-Dec-2024

    Summary

    Official Symbol
    B3galt2provided by RGD
    Official Full Name
    Beta-1,3-galactosyltransferase 2provided by RGD
    Primary source
    RGD:1586615
    See related
    EnsemblRapid:ENSRNOG00000088477 AllianceGenome:RGD:1586615
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity. Predicted to be involved in galactosylceramide biosynthetic process and protein O-linked glycosylation. Predicted to act upstream of or within oligosaccharide biosynthetic process. Predicted to be active in Golgi membrane. Orthologous to human B3GALT2 (beta-1,3-galactosyltransferase 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 112.2), Heart (RPKM 94.9) and 9 other tissues See more
    Orthologs
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    Genomic context

    See B3galt2 in Genome Data Viewer
    Location:
    13q21
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (57939724..57948735)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (55389406..55398419)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (60435946..60444957)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481506 Neighboring gene uncharacterized LOC120096267 Neighboring gene ribosomal protein L9, pseudogene 13 Neighboring gene cell division cycle 73 Neighboring gene uncharacterized LOC108352545 Neighboring gene glutaredoxin 2 Neighboring gene Ro60, Y RNA binding protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in galactosylceramide biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within oligosaccharide biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein O-linked glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    beta-1,3-galactosyltransferase 2
    Names
    UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 2
    UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
    NP_001102962.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109492.1NP_001102962.1  beta-1,3-galactosyltransferase 2

      See identical proteins and their annotated locations for NP_001102962.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473958
      UniProtKB/TrEMBL
      A6ICN8, D4A950
      Related
      ENSRNOP00000109684.1, ENSRNOT00000167392.1
      Conserved Domains (1) summary
      pfam01762
      Location:165359
      Galactosyl_T; Galactosyltransferase

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      57939724..57948735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)